Wall clock time and date at job start Mon Mar 30 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00258 * 2 1 4 4 H 1.48501 * 109.47429 * 272.76325 * 3 2 1 5 5 H 1.48493 * 109.47335 * 32.76539 * 3 2 1 6 6 H 1.48506 * 109.47061 * 152.76913 * 3 2 1 7 7 C 1.37880 * 119.99339 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00320 * 354.27282 * 7 2 1 9 9 C 1.50705 * 119.99918 * 174.28030 * 7 2 1 10 10 C 1.52997 * 115.54818 * 90.78696 * 9 7 2 11 11 S 1.81394 * 109.47253 * 40.03567 * 10 9 7 12 12 O 1.42104 * 109.47004 * 69.32455 * 11 10 9 13 13 C 1.81406 * 103.00130 * 185.70808 * 11 10 9 14 14 C 1.52995 * 109.47303 * 305.00400 * 13 11 10 15 15 C 1.53000 * 109.47286 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46903 * 59.99684 * 15 14 13 17 17 C 1.53002 * 109.47487 * 299.99967 * 16 15 14 18 18 C 1.53000 * 109.47063 * 184.99976 * 13 11 10 19 19 C 1.53005 * 117.49444 * 305.12178 * 9 7 2 20 20 C 1.52999 * 60.02818 * 252.47534 * 19 9 7 21 21 H 0.97009 * 119.99764 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.46922 * 160.03432 * 10 9 7 23 23 H 1.08999 * 109.47527 * 280.03082 * 10 9 7 24 24 H 1.08999 * 109.46541 * 65.00149 * 13 11 10 25 25 H 1.09006 * 109.46778 * 299.99220 * 14 13 11 26 26 H 1.09000 * 109.47437 * 59.99633 * 14 13 11 27 27 H 1.08997 * 109.47230 * 299.99782 * 15 14 13 28 28 H 1.08994 * 109.47138 * 179.97438 * 15 14 13 29 29 H 1.09008 * 109.46768 * 180.02562 * 16 15 14 30 30 H 1.08999 * 109.47301 * 60.00520 * 16 15 14 31 31 H 1.09006 * 109.46962 * 300.00729 * 17 16 15 32 32 H 1.08992 * 109.47454 * 180.02562 * 17 16 15 33 33 H 1.09007 * 109.47054 * 299.99951 * 18 13 11 34 34 H 1.08997 * 109.47098 * 60.00135 * 18 13 11 35 35 H 1.09000 * 117.50036 * 359.97438 * 19 9 7 36 36 H 1.09001 * 117.49310 * 144.97232 * 19 9 7 37 37 H 1.09003 * 117.49834 * 107.50406 * 20 19 9 38 38 H 1.09002 * 117.49549 * 252.52426 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4383 2.0801 -1.3984 5 1 1.4772 2.6350 0.7577 6 1 3.5748 1.4238 0.6407 7 6 2.0044 -1.1942 -0.0005 8 1 1.4684 -2.1271 0.0924 9 6 3.5058 -1.1975 -0.1306 10 6 4.2824 -1.1497 1.1868 11 16 3.4620 -2.2075 2.4109 12 8 3.6131 -3.5700 2.0367 13 6 4.4080 -1.8882 3.9255 14 6 5.8921 -2.1541 3.6656 15 6 6.6900 -1.8842 4.9428 16 6 6.1942 -2.8065 6.0583 17 6 4.7101 -2.5405 6.3184 18 6 3.9121 -2.8109 5.0406 19 6 4.1121 -0.4740 -1.3348 20 6 4.1145 -2.0030 -1.2811 21 1 -0.4850 0.8401 0.0004 22 1 5.2994 -1.5059 1.0221 23 1 4.3117 -0.1240 1.5543 24 1 4.2723 -0.8493 4.2263 25 1 6.0277 -3.1931 3.3648 26 1 6.2453 -1.4967 2.8711 27 1 6.5543 -0.8452 5.2433 28 1 7.7471 -2.0741 4.7578 29 1 6.7624 -2.6138 6.9685 30 1 6.3300 -3.8455 5.7580 31 1 4.5744 -1.5015 6.6187 32 1 4.3570 -3.1973 7.1133 33 1 2.8547 -2.6213 5.2258 34 1 4.0477 -3.8497 4.7398 35 1 3.4251 0.0040 -2.0330 36 1 5.0641 0.0363 -1.1882 37 1 3.4291 -2.5310 -1.9440 38 1 5.0681 -2.4987 -1.0989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088272328.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:21 Heat of formation + Delta-G solvation = -39.065054 kcal Electronic energy + Delta-G solvation = -17755.247716 eV Core-core repulsion = 15110.110398 eV Total energy + Delta-G solvation = -2645.137318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 256.124 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.09778 -36.94105 -34.83794 -32.19271 -30.83143 -30.65551 -28.00834 -25.47602 -22.56358 -22.51178 -21.61116 -19.71620 -19.10669 -17.00208 -16.23653 -15.66586 -15.00069 -14.53152 -14.27868 -14.25435 -14.00202 -13.57932 -13.13496 -12.80080 -12.64838 -12.37037 -12.18372 -12.06771 -11.73147 -11.20823 -11.09381 -11.00378 -10.80616 -10.56119 -10.38795 -10.37260 -10.19580 -10.06090 -9.72254 -9.38017 -8.92488 -8.66562 -8.39037 -7.23603 -6.20729 -4.27208 2.29362 3.24256 3.35062 3.37968 3.53244 4.34947 4.52396 4.76552 4.78234 4.93557 4.97078 5.08946 5.30205 5.34191 5.47838 5.57481 5.60972 5.67214 5.71926 5.80355 5.93478 6.01532 6.13599 6.14566 6.17157 6.19402 6.25017 6.29816 6.32109 6.43486 6.49629 6.51039 6.73697 6.99179 7.13276 7.66707 8.40020 8.83401 9.42081 10.89626 Molecular weight = 256.12amu Principal moments of inertia in cm(-1) A = 0.026980 B = 0.006916 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.550579 B = 4047.534701 C = 4199.870070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.089 3.911 3 Si 0.874 3.126 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.254 1.254 7 C -0.508 4.508 8 H 0.086 0.914 9 C 0.022 3.978 10 C -0.401 4.401 11 S 1.291 4.709 12 O -0.854 6.854 13 C -0.441 4.441 14 C -0.112 4.112 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.114 4.114 18 C -0.093 4.093 19 C -0.197 4.197 20 C -0.180 4.180 21 H 0.268 0.732 22 H 0.063 0.937 23 H 0.108 0.892 24 H 0.114 0.886 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.795 0.541 10.373 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.115 4.115 3 Si 0.701 3.299 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.178 1.178 7 C -0.546 4.546 8 H 0.104 0.896 9 C 0.020 3.980 10 C -0.539 4.539 11 S 1.490 4.510 12 O -0.849 6.849 13 C -0.555 4.555 14 C -0.150 4.150 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.131 4.131 19 C -0.235 4.235 20 C -0.217 4.217 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.126 0.874 24 H 0.132 0.868 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.856 0.014 10.294 12.950 hybrid contribution 2.721 0.589 -0.479 2.825 sum 10.577 0.602 9.816 14.443 Atomic orbital electron populations 1.69906 1.06373 1.27492 1.48222 1.24952 0.94467 0.98949 0.93174 0.86931 0.80904 0.83296 0.78727 1.20465 1.21671 1.17815 1.20366 0.86538 0.95084 1.52627 0.89648 1.18850 0.94678 1.00286 0.84179 1.27352 1.05476 1.10846 1.10218 1.71699 1.05721 0.88363 0.85187 1.92955 1.81162 1.29950 1.80872 1.28047 1.04668 1.05817 1.16966 1.21579 0.94059 1.01628 0.97763 1.21501 0.98616 0.99717 0.95437 1.21520 0.96333 0.99722 0.98060 1.21508 0.94965 1.01491 0.97245 1.21144 0.99547 0.98912 0.93544 1.22971 1.01182 0.94712 1.04679 1.22883 1.00889 0.92954 1.05002 0.92203 0.91776 0.87425 0.86775 0.92034 0.91960 0.91971 0.92679 0.92487 0.92330 0.91877 0.92221 0.90930 0.91801 0.89279 0.91129 0.89331 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.67 13.96 55.43 0.77 -23.90 16 2 C 0.09 2.34 5.46 -17.82 -0.10 2.25 16 3 Si 0.87 19.79 25.04 -169.99 -4.26 15.53 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.25 -5.30 5.41 56.52 0.31 -5.00 16 7 C -0.51 -13.20 8.14 -34.44 -0.28 -13.48 16 8 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.02 0.50 1.12 -155.62 -0.17 0.33 16 10 C -0.40 -7.90 5.11 37.16 0.19 -7.71 16 11 S 1.29 24.22 11.53 -107.50 -1.24 22.98 16 12 O -0.85 -20.19 18.13 -35.23 -0.64 -20.82 16 13 C -0.44 -6.44 2.71 -26.73 -0.07 -6.51 16 14 C -0.11 -1.64 4.97 -26.73 -0.13 -1.77 16 15 C -0.11 -1.38 5.92 -26.73 -0.16 -1.53 16 16 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 17 C -0.11 -1.28 5.93 -26.70 -0.16 -1.44 16 18 C -0.09 -1.26 5.20 -26.70 -0.14 -1.40 16 19 C -0.20 -4.21 7.61 -26.73 -0.20 -4.42 16 20 C -0.18 -3.92 9.89 -26.70 -0.26 -4.19 16 21 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 22 H 0.06 1.20 7.04 -51.92 -0.37 0.84 16 23 H 0.11 1.96 6.41 -51.92 -0.33 1.62 16 24 H 0.11 1.43 8.14 -51.92 -0.42 1.01 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.90 6.66 -51.93 -0.35 0.55 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.97 7.13 -51.93 -0.37 1.60 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 38 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 LS Contribution 305.66 15.07 4.61 4.61 Total: -1.00 -30.47 305.66 -8.96 -39.44 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.56 Total: 3.53 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: -1.65 Total: -41.37 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.77 Total: -23.90 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.64 Total: -20.82 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.26 Total: 15.53 kcal Atomic # 16 Polarization: 24.22 SS G_CDS: -1.24 Total: 22.98 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.47 -8.96 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088272328.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.374 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds