Wall clock time and date at job start Mon Mar 30 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81402 * 109.46693 * 2 1 4 4 C 1.81406 * 102.99928 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47056 * 180.02562 * 4 3 2 6 6 N 1.29956 * 126.28956 * 89.97618 * 5 4 3 7 7 O 1.21297 * 110.25152 * 179.97438 * 6 5 4 8 8 C 1.33645 * 109.81173 * 359.97438 * 7 6 5 9 9 C 1.50695 * 126.55058 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47521 * 180.02562 * 9 8 7 11 11 C 1.53008 * 109.47004 * 300.02436 * 9 8 7 12 12 C 1.52996 * 109.47310 * 60.02217 * 9 8 7 13 13 C 1.50702 * 109.47159 * 174.99934 * 12 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 N 1.31128 * 106.90006 * 0.22611 * 8 7 6 22 22 H 1.09003 * 109.46825 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47358 * 299.99713 * 1 2 3 24 24 H 1.09003 * 109.47037 * 60.00012 * 1 2 3 25 25 H 1.09002 * 109.47314 * 240.00129 * 2 1 3 26 26 H 1.09001 * 109.47516 * 119.99808 * 2 1 3 27 27 H 1.08993 * 109.47140 * 60.00231 * 4 3 2 28 28 H 1.09001 * 109.46740 * 300.00088 * 4 3 2 29 29 H 1.08999 * 109.46998 * 60.00229 * 11 9 8 30 30 H 1.09004 * 109.46896 * 180.02562 * 11 9 8 31 31 H 1.09001 * 109.46930 * 299.99977 * 11 9 8 32 32 H 1.09004 * 109.47066 * 55.00137 * 12 9 8 33 33 H 1.08994 * 109.47405 * 294.99967 * 12 9 8 34 34 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5060 -0.0008 5 6 4.5962 2.8611 -0.0002 6 7 4.9327 3.5524 1.0475 7 8 5.4430 4.6006 0.7129 8 6 5.4823 4.6799 -0.6207 9 6 6.0368 5.8195 -1.4360 10 1 5.9275 5.5942 -2.4969 11 6 5.2716 7.1026 -1.1056 12 6 7.5184 6.0097 -1.1051 13 6 8.1030 7.0660 -2.0072 14 1 7.4800 7.5532 -2.7427 15 6 9.4317 7.4149 -1.8894 16 7 10.1903 6.8218 -0.9936 17 14 10.1544 8.7295 -3.0023 18 1 10.0051 10.0596 -2.3590 19 1 11.5947 8.4486 -3.2298 20 1 9.4379 8.7257 -4.3031 21 7 4.9413 3.5790 -1.0841 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.2398 0.9547 -0.8909 28 1 4.2405 0.9543 0.8890 29 1 5.3811 7.3279 -0.0448 30 1 5.6724 7.9268 -1.6957 31 1 4.2161 6.9670 -1.3413 32 1 8.0482 5.0691 -1.2563 33 1 7.6215 6.3218 -0.0660 34 1 11.1252 7.0670 -0.9110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233820708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:44 Heat of formation + Delta-G solvation = 43.411388 kcal Electronic energy + Delta-G solvation = -16273.343076 eV Core-core repulsion = 13528.241862 eV Total energy + Delta-G solvation = -2745.101215 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 256.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.21136 -35.97206 -35.53738 -33.09948 -32.73672 -31.36486 -29.17933 -27.14428 -24.65437 -24.02009 -23.13456 -22.20742 -19.66237 -17.75857 -16.97112 -16.57891 -16.32765 -15.23414 -14.89219 -14.74480 -14.55900 -14.35650 -13.56138 -13.28838 -12.67366 -12.63637 -12.25079 -12.13767 -11.93490 -11.73766 -11.39078 -11.10804 -10.97657 -10.93049 -10.66826 -10.54433 -10.28573 -10.14660 -9.86796 -9.27004 -9.21149 -8.45557 -7.89454 -6.09550 -4.13505 0.99343 1.71027 2.23328 2.77613 3.28307 3.30244 3.35695 3.38079 3.71731 4.18884 4.39925 4.58545 4.63154 4.93673 5.04748 5.05494 5.26994 5.36440 5.45436 5.48875 5.72805 5.74562 5.82824 5.92867 6.22252 6.27962 6.55245 6.66176 6.82394 7.46530 7.54817 7.85871 8.21846 8.50761 8.90821 9.51034 11.01802 Molecular weight = 256.10amu Principal moments of inertia in cm(-1) A = 0.056415 B = 0.003622 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.200800 B = 7727.818198 C = 7834.789825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 S -0.230 6.230 4 C 0.007 3.993 5 C 0.170 3.830 6 N -0.381 5.381 7 O 0.083 5.917 8 C 0.223 3.777 9 C -0.002 4.002 10 H 0.107 0.893 11 C -0.136 4.136 12 C 0.029 3.971 13 C -0.521 4.521 14 H 0.063 0.937 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.272 1.272 21 N -0.491 5.491 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.022 0.978 33 H 0.029 0.971 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.984 -10.738 1.641 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.243 4.243 3 S -0.006 6.006 4 C -0.142 4.142 5 C -0.103 4.103 6 N -0.091 5.091 7 O 0.024 5.976 8 C 0.004 3.996 9 C -0.022 4.022 10 H 0.125 0.875 11 C -0.194 4.194 12 C -0.009 4.009 13 C -0.559 4.559 14 H 0.081 0.919 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.197 1.197 21 N -0.225 5.225 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.668 -10.416 2.217 18.945 hybrid contribution 1.409 -0.432 -0.563 1.578 sum -14.259 -10.849 1.654 17.993 Atomic orbital electron populations 1.21499 0.91994 1.02587 1.03382 1.23368 1.00397 0.95363 1.05136 1.87285 1.02761 1.12428 1.98097 1.21309 0.93909 0.91779 1.07166 1.24574 1.01806 0.99009 0.84941 1.74591 1.14880 0.95707 1.23873 1.85293 1.56926 1.29787 1.25594 1.29640 0.92101 0.96447 0.81423 1.20388 0.99164 0.86209 0.96441 0.87510 1.21789 0.97742 0.97025 1.02802 1.19250 0.85338 0.97999 0.98345 1.21057 0.95048 1.20925 1.18900 0.91906 1.25006 0.97153 0.96572 0.95512 1.69968 1.06912 1.41964 1.34154 0.86536 0.78362 0.81817 0.80978 1.20540 1.21239 1.19713 1.71917 1.17734 1.04131 1.28677 0.90942 0.91615 0.91532 0.89780 0.89912 0.87025 0.87591 0.92275 0.89585 0.93988 0.95985 0.95220 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.92 37.16 0.37 -0.57 16 2 C -0.09 -0.76 6.66 37.16 0.25 -0.52 16 3 S -0.23 -2.88 21.72 -107.50 -2.33 -5.22 16 4 C 0.01 0.10 6.57 36.00 0.24 0.33 16 5 C 0.17 2.98 7.48 -156.36 -1.17 1.81 16 6 N -0.38 -7.24 12.16 30.90 0.38 -6.87 16 7 O 0.08 1.66 11.31 18.10 0.20 1.86 16 8 C 0.22 4.38 7.02 -13.06 -0.09 4.29 16 9 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 10 H 0.11 2.06 8.14 -51.93 -0.42 1.63 16 11 C -0.14 -2.34 8.99 37.16 0.33 -2.01 16 12 C 0.03 0.69 4.43 -27.88 -0.12 0.57 16 13 C -0.52 -13.60 8.41 -34.44 -0.29 -13.89 16 14 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 17 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 N -0.49 -9.46 11.55 -9.86 -0.11 -9.57 16 22 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.11 1.19 8.14 -51.92 -0.42 0.76 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.50 6.95 -51.93 -0.36 1.14 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 308.63 15.07 4.65 4.65 Total: -1.00 -29.83 308.63 -7.28 -37.11 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.94 Total: -3.81 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -0.84 Total: -8.73 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 1.00 Total: -41.52 kcal Atomic # 8 Polarization: 1.66 SS G_CDS: 0.20 Total: 1.86 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.33 Total: -5.22 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.83 -7.28 -37.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233820708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.520 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds