Wall clock time and date at job start Mon Mar 30 2020 06:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81402 * 109.46693 * 2 1 4 4 C 1.81406 * 102.99928 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47056 * 180.02562 * 4 3 2 6 6 N 1.29956 * 126.28956 * 89.97618 * 5 4 3 7 7 O 1.21297 * 110.25152 * 179.97438 * 6 5 4 8 8 C 1.33645 * 109.81173 * 359.97438 * 7 6 5 9 9 C 1.50695 * 126.55058 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47521 * 180.02562 * 9 8 7 11 11 C 1.53008 * 109.47004 * 300.02436 * 9 8 7 12 12 C 1.52996 * 109.47310 * 60.02217 * 9 8 7 13 13 C 1.50702 * 109.47159 * 174.99934 * 12 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 N 1.31128 * 106.90006 * 0.22611 * 8 7 6 22 22 H 1.09003 * 109.46825 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47358 * 299.99713 * 1 2 3 24 24 H 1.09003 * 109.47037 * 60.00012 * 1 2 3 25 25 H 1.09002 * 109.47314 * 240.00129 * 2 1 3 26 26 H 1.09001 * 109.47516 * 119.99808 * 2 1 3 27 27 H 1.08993 * 109.47140 * 60.00231 * 4 3 2 28 28 H 1.09001 * 109.46740 * 300.00088 * 4 3 2 29 29 H 1.08999 * 109.46998 * 60.00229 * 11 9 8 30 30 H 1.09004 * 109.46896 * 180.02562 * 11 9 8 31 31 H 1.09001 * 109.46930 * 299.99977 * 11 9 8 32 32 H 1.09004 * 109.47066 * 55.00137 * 12 9 8 33 33 H 1.08994 * 109.47405 * 294.99967 * 12 9 8 34 34 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5060 -0.0008 5 6 4.5962 2.8611 -0.0002 6 7 4.9327 3.5524 1.0475 7 8 5.4430 4.6006 0.7129 8 6 5.4823 4.6799 -0.6207 9 6 6.0368 5.8195 -1.4360 10 1 5.9275 5.5942 -2.4969 11 6 5.2716 7.1026 -1.1056 12 6 7.5184 6.0097 -1.1051 13 6 8.1030 7.0660 -2.0072 14 1 7.4800 7.5532 -2.7427 15 6 9.4317 7.4149 -1.8894 16 7 10.1903 6.8218 -0.9936 17 14 10.1544 8.7295 -3.0023 18 1 10.0051 10.0596 -2.3590 19 1 11.5947 8.4486 -3.2298 20 1 9.4379 8.7257 -4.3031 21 7 4.9413 3.5790 -1.0841 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.2398 0.9547 -0.8909 28 1 4.2405 0.9543 0.8890 29 1 5.3811 7.3279 -0.0448 30 1 5.6724 7.9268 -1.6957 31 1 4.2161 6.9670 -1.3413 32 1 8.0482 5.0691 -1.2563 33 1 7.6215 6.3218 -0.0660 34 1 11.1252 7.0670 -0.9110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233820708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:44 Heat of formation + Delta-G solvation = 25.208864 kcal Electronic energy + Delta-G solvation = -16274.132397 eV Core-core repulsion = 13528.241862 eV Total energy + Delta-G solvation = -2745.890535 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 256.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.68236 -37.58292 -37.05446 -34.62372 -33.68399 -32.92966 -30.42462 -29.00003 -26.31263 -24.96135 -24.52995 -23.72465 -21.21034 -19.23835 -18.64773 -18.31820 -17.32860 -16.51961 -16.35792 -15.83012 -15.77982 -15.53993 -14.98868 -14.50267 -14.42683 -13.79921 -13.58961 -13.29646 -13.16906 -13.02443 -12.79020 -12.65683 -12.34805 -12.32100 -12.26214 -12.19707 -11.89650 -11.58145 -11.25428 -11.10759 -10.78426 -10.54135 -8.84184 -8.17504 -6.28014 -0.16904 0.36759 1.30450 1.47649 1.48074 1.52054 1.58983 1.78672 2.39992 2.48855 2.86750 3.18174 3.71542 3.98868 4.03108 4.05394 4.13024 4.26567 4.27860 4.50288 4.52551 4.73952 4.78165 4.86335 4.90544 5.03662 5.07329 5.22899 5.36185 5.41253 5.58150 5.80383 6.16824 6.86017 7.01484 7.41309 8.95111 Molecular weight = 256.10amu Principal moments of inertia in cm(-1) A = 0.056415 B = 0.003622 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.200800 B = 7727.818198 C = 7834.789825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 S -0.283 6.283 4 C 0.011 3.989 5 C 0.177 3.823 6 N -0.396 5.396 7 O 0.065 5.935 8 C 0.217 3.783 9 C 0.009 3.991 10 H 0.114 0.886 11 C -0.129 4.129 12 C 0.037 3.963 13 C -0.528 4.528 14 H 0.079 0.921 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.290 1.290 20 H -0.258 1.258 21 N -0.501 5.501 22 H 0.098 0.902 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.067 0.933 32 H -0.011 1.011 33 H 0.005 0.995 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 -11.316 0.647 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.225 4.225 3 S -0.059 6.059 4 C -0.138 4.138 5 C -0.096 4.096 6 N -0.109 5.109 7 O 0.010 5.990 8 C -0.003 4.003 9 C -0.012 4.012 10 H 0.132 0.868 11 C -0.187 4.187 12 C -0.001 4.001 13 C -0.566 4.566 14 H 0.097 0.903 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.790 3.210 18 H -0.198 1.198 19 H -0.216 1.216 20 H -0.182 1.182 21 N -0.235 5.235 22 H 0.117 0.883 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.007 0.993 33 H 0.024 0.976 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.089 -10.970 1.219 20.343 hybrid contribution 1.758 -0.386 -0.227 1.814 sum -15.331 -11.356 0.991 19.105 Atomic orbital electron populations 1.21539 0.91070 1.03996 1.02804 1.23500 1.00841 0.91582 1.06628 1.87476 1.02626 1.17559 1.98284 1.21494 0.93888 0.89461 1.08948 1.25337 1.00322 1.00022 0.83930 1.74580 1.15932 0.95833 1.24512 1.85274 1.57563 1.30512 1.25655 1.29575 0.92486 0.96668 0.81547 1.20183 0.96424 0.87738 0.96832 0.86777 1.21747 0.98862 0.95461 1.02652 1.19037 0.88309 0.95983 0.96797 1.21506 0.95377 1.20793 1.18921 0.90300 1.25952 0.97849 0.98912 0.96985 1.70116 1.07235 1.43950 1.36259 0.85428 0.77191 0.78914 0.79427 1.19767 1.21573 1.18201 1.71924 1.18013 1.04104 1.29426 0.88331 0.92198 0.92173 0.88318 0.88352 0.85349 0.85653 0.92565 0.89499 0.91452 0.99270 0.97622 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.92 71.98 0.71 -0.82 16 2 C -0.08 -1.05 6.66 71.98 0.48 -0.57 16 3 S -0.28 -6.70 21.72 -56.49 -1.23 -7.93 16 4 C 0.01 0.26 6.57 71.23 0.47 0.73 16 5 C 0.18 6.12 7.48 138.46 1.04 7.16 16 6 N -0.40 -15.09 12.16 -60.29 -0.73 -15.82 16 7 O 0.06 2.63 11.31 74.82 0.85 3.47 16 8 C 0.22 8.57 7.02 88.38 0.62 9.19 16 9 C 0.01 0.34 2.81 -11.54 -0.03 0.31 16 10 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 11 C -0.13 -4.34 8.99 71.98 0.65 -3.69 16 12 C 0.04 1.84 4.43 29.85 0.13 1.97 16 13 C -0.53 -27.59 8.41 25.60 0.22 -27.37 16 14 H 0.08 3.79 7.06 -2.91 -0.02 3.77 16 15 C 0.00 0.05 5.46 84.66 0.46 0.51 16 16 N -0.94 -55.40 13.29 21.45 0.28 -55.12 16 17 Si 0.97 42.20 29.54 68.60 2.03 44.23 16 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 N -0.50 -19.08 11.55 -303.17 -3.50 -22.59 16 22 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 2.89 6.95 -2.38 -0.02 2.88 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 33 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -64.83 308.63 3.52 -61.32 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.08 Total: 5.02 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 4.74 Total: -12.58 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -3.95 Total: -93.53 kcal Atomic # 8 Polarization: 2.63 SS G_CDS: 0.85 Total: 3.47 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: -6.70 SS G_CDS: -1.23 Total: -7.93 kcal Total: -64.83 3.52 -61.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233820708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.525 kcal (2) G-P(sol) polarization free energy of solvation -64.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds