Wall clock time and date at job start Mon Mar 30 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99600 * 2 1 4 4 H 1.48495 * 109.46745 * 269.99863 * 3 2 1 5 5 H 1.48507 * 109.47080 * 29.99859 * 3 2 1 6 6 H 1.48502 * 109.46973 * 149.99787 * 3 2 1 7 7 C 1.37869 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00300 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99662 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47204 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47192 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47192 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.52593 * 60.00300 * 13 12 11 15 15 O 1.20833 * 119.99655 * 359.86756 * 14 13 12 16 16 O 1.34222 * 120.00432 * 180.15023 * 14 13 12 17 17 C 1.53185 * 109.57429 * 180.15853 * 13 12 11 18 18 C 1.53175 * 109.03534 * 176.92014 * 17 13 12 19 19 C 1.53095 * 109.16271 * 303.01417 * 18 17 13 20 20 O 1.42893 * 109.41302 * 57.61003 * 19 18 17 21 21 C 1.42898 * 114.10337 * 298.84512 * 20 19 18 22 22 H 0.97002 * 120.00524 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47164 * 60.00506 * 9 7 2 24 24 H 1.08999 * 109.47318 * 299.99534 * 9 7 2 25 25 H 1.09003 * 109.47112 * 59.99579 * 10 9 7 26 26 H 1.09007 * 109.46805 * 300.00438 * 10 9 7 27 27 H 1.08994 * 109.47197 * 60.00324 * 11 10 9 28 28 H 1.08999 * 109.47298 * 299.99345 * 11 10 9 29 29 H 1.09003 * 109.47112 * 59.99547 * 12 11 10 30 30 H 1.09007 * 109.46805 * 300.00406 * 12 11 10 31 31 H 0.96701 * 117.00458 * 179.72178 * 16 14 13 32 32 H 1.09000 * 109.54007 * 296.78680 * 17 13 12 33 33 H 1.09000 * 109.54356 * 57.04906 * 17 13 12 34 34 H 1.09004 * 109.51585 * 183.11462 * 18 17 13 35 35 H 1.08997 * 109.57801 * 62.95637 * 18 17 13 36 36 H 1.09006 * 109.47945 * 297.63377 * 19 18 17 37 37 H 1.08993 * 109.48956 * 177.60474 * 19 18 17 38 38 H 1.09002 * 109.48206 * 301.17190 * 21 20 19 39 39 H 1.09007 * 109.49370 * 181.14569 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0011 10 6 4.0217 -2.6363 0.0010 11 6 5.5517 -2.6362 0.0022 12 6 6.0618 -4.0787 0.0028 13 6 7.5917 -4.0786 0.0033 14 6 8.0949 -3.3682 1.2334 15 8 7.3101 -2.9065 2.0278 16 8 9.4146 -3.2433 1.4438 17 6 8.1051 -5.5219 -0.0001 18 6 9.6348 -5.5078 -0.0773 19 6 10.0679 -4.7342 -1.3254 20 8 9.5317 -3.4107 -1.2737 21 6 8.1038 -3.3602 -1.2478 22 1 -0.4851 0.8400 -0.0004 23 1 3.8745 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 3.6587 -3.1500 -0.8892 26 1 3.6580 -3.1504 0.8908 27 1 5.9142 -2.1228 0.8927 28 1 5.9157 -2.1221 -0.8873 29 1 5.6992 -4.5927 -0.8875 30 1 5.6977 -4.5925 0.8925 31 1 9.6893 -2.7762 2.2446 32 1 7.7907 -6.0228 0.9155 33 1 7.7012 -6.0504 -0.8636 34 1 10.0058 -6.5311 -0.1360 35 1 10.0409 -5.0235 0.8107 36 1 9.6964 -5.2424 -2.2152 37 1 11.1561 -4.6844 -1.3629 38 1 7.7066 -3.8504 -2.1366 39 1 7.7769 -2.3205 -1.2294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691691409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:59 Heat of formation + Delta-G solvation = -161.528338 kcal Electronic energy + Delta-G solvation = -19910.738458 eV Core-core repulsion = 16817.537862 eV Total energy + Delta-G solvation = -3093.200596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19448 -38.79069 -36.61734 -35.41243 -34.04598 -32.70358 -31.55373 -28.77995 -25.61679 -25.42873 -24.36743 -22.65271 -20.97078 -20.07545 -19.59133 -18.10294 -16.86648 -16.62860 -16.31317 -16.01757 -15.45514 -14.62923 -14.52932 -14.16315 -13.92908 -13.74219 -13.03870 -12.93269 -12.75258 -12.47552 -12.21266 -12.00241 -11.83814 -11.58272 -11.25925 -11.01514 -10.92116 -10.80599 -10.68614 -10.37241 -10.03215 -9.79429 -9.63932 -9.49956 -9.35529 -9.06835 -8.46517 -5.97532 -3.94527 2.20766 2.96405 3.35992 3.43057 3.49258 3.66861 4.36985 4.41179 4.52268 4.54290 4.70156 4.79634 5.11497 5.18356 5.33081 5.35560 5.37017 5.39198 5.51793 5.57592 5.61581 5.65989 5.79846 5.96037 6.10553 6.19427 6.26250 6.40434 6.57279 6.77401 6.93750 6.99304 7.05819 7.43086 7.56911 7.88551 7.94248 8.62448 9.07984 9.66005 11.16185 Molecular weight = 256.15amu Principal moments of inertia in cm(-1) A = 0.035843 B = 0.004420 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.995399 B = 6332.991477 C = 6426.496879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.070 0.930 9 C -0.015 4.015 10 C -0.098 4.098 11 C -0.138 4.138 12 C -0.099 4.099 13 C -0.083 4.083 14 C 0.488 3.512 15 O -0.499 6.499 16 O -0.502 6.502 17 C -0.111 4.111 18 C -0.166 4.166 19 C 0.063 3.937 20 O -0.369 6.369 21 C 0.070 3.930 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.009 0.991 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.400 0.600 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.934 -11.736 -1.339 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.136 4.136 11 C -0.175 4.175 12 C -0.136 4.136 13 C -0.084 4.084 14 C 0.330 3.670 15 O -0.386 6.386 16 O -0.313 6.313 17 C -0.149 4.149 18 C -0.204 4.204 19 C -0.014 4.014 20 O -0.287 6.287 21 C -0.007 4.007 22 H 0.071 0.929 23 H 0.033 0.967 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.258 0.742 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 22.552 -11.535 -1.472 25.374 hybrid contribution 0.231 0.937 0.565 1.118 sum 22.784 -10.598 -0.907 25.144 Atomic orbital electron populations 1.69924 1.06295 1.26761 1.51663 1.25039 0.94719 0.99169 0.94681 0.86777 0.80467 0.83634 0.78440 1.20347 1.21443 1.18969 1.21203 0.89739 0.94367 1.50246 0.91139 1.19579 0.96892 0.92700 0.96071 1.21392 0.91839 0.99605 1.00740 1.22031 0.98363 0.94591 1.02511 1.21578 0.88952 0.99944 1.03140 1.21374 0.98392 0.96334 0.92344 1.23165 0.79945 0.76918 0.86953 1.90731 1.56540 1.45243 1.46116 1.84686 1.26115 1.72198 1.48259 1.21665 0.96094 0.93487 1.03629 1.22424 0.95630 1.01092 1.01208 1.22530 0.99026 0.83638 0.96196 1.88008 1.19409 1.26829 1.94477 1.22726 0.81394 1.02089 0.94446 0.92858 0.96677 0.97300 0.93181 0.92897 0.90023 0.92922 0.90546 0.90784 0.74246 0.90882 0.90090 0.90924 0.88868 0.93468 0.88976 0.91362 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.85 13.96 55.43 0.77 -28.08 16 2 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 7 C -0.52 -15.42 9.66 -34.44 -0.33 -15.75 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C -0.14 -2.33 4.55 -26.73 -0.12 -2.45 16 12 C -0.10 -1.30 3.92 -26.73 -0.10 -1.41 16 13 C -0.08 -0.94 0.53 -155.52 -0.08 -1.02 16 14 C 0.49 6.28 6.60 36.00 0.24 6.52 16 15 O -0.50 -8.23 14.42 -18.76 -0.27 -8.50 16 16 O -0.50 -5.01 9.46 -44.91 -0.42 -5.44 16 17 C -0.11 -0.98 4.80 -26.55 -0.13 -1.10 16 18 C -0.17 -1.29 5.68 -26.59 -0.15 -1.44 16 19 C 0.06 0.52 6.84 37.21 0.25 0.77 16 20 O -0.37 -4.13 9.65 -51.21 -0.49 -4.62 16 21 C 0.07 0.77 5.10 37.20 0.19 0.96 16 22 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 23 H 0.01 0.39 7.20 -51.93 -0.37 0.01 16 24 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.08 1.54 5.52 -51.93 -0.29 1.25 16 28 H 0.05 0.83 6.49 -51.93 -0.34 0.49 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.03 8.10 -51.93 -0.42 0.60 16 31 H 0.40 2.52 9.10 45.56 0.41 2.94 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.81 5.55 -51.93 -0.29 0.52 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.25 6.57 -51.93 -0.34 0.91 16 LS Contribution 303.76 15.07 4.58 4.58 Total: -1.00 -34.75 303.76 -6.51 -41.26 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.42 Total: -1.44 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.59 Total: -15.73 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 0.77 Total: -28.08 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -1.19 Total: -18.56 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.75 -6.51 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691691409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.270 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds