Wall clock time and date at job start Mon Mar 30 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99600 * 2 1 4 4 H 1.48495 * 109.46745 * 269.99863 * 3 2 1 5 5 H 1.48507 * 109.47080 * 29.99859 * 3 2 1 6 6 H 1.48502 * 109.46973 * 149.99787 * 3 2 1 7 7 C 1.37869 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00300 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99662 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47204 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47192 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47192 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.52593 * 60.00300 * 13 12 11 15 15 O 1.20833 * 119.99655 * 359.86756 * 14 13 12 16 16 O 1.34222 * 120.00432 * 180.15023 * 14 13 12 17 17 C 1.53185 * 109.57429 * 180.15853 * 13 12 11 18 18 C 1.53175 * 109.03534 * 176.92014 * 17 13 12 19 19 C 1.53095 * 109.16271 * 303.01417 * 18 17 13 20 20 O 1.42893 * 109.41302 * 57.61003 * 19 18 17 21 21 C 1.42898 * 114.10337 * 298.84512 * 20 19 18 22 22 H 0.97002 * 120.00524 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47164 * 60.00506 * 9 7 2 24 24 H 1.08999 * 109.47318 * 299.99534 * 9 7 2 25 25 H 1.09003 * 109.47112 * 59.99579 * 10 9 7 26 26 H 1.09007 * 109.46805 * 300.00438 * 10 9 7 27 27 H 1.08994 * 109.47197 * 60.00324 * 11 10 9 28 28 H 1.08999 * 109.47298 * 299.99345 * 11 10 9 29 29 H 1.09003 * 109.47112 * 59.99547 * 12 11 10 30 30 H 1.09007 * 109.46805 * 300.00406 * 12 11 10 31 31 H 0.96701 * 117.00458 * 179.72178 * 16 14 13 32 32 H 1.09000 * 109.54007 * 296.78680 * 17 13 12 33 33 H 1.09000 * 109.54356 * 57.04906 * 17 13 12 34 34 H 1.09004 * 109.51585 * 183.11462 * 18 17 13 35 35 H 1.08997 * 109.57801 * 62.95637 * 18 17 13 36 36 H 1.09006 * 109.47945 * 297.63377 * 19 18 17 37 37 H 1.08993 * 109.48956 * 177.60474 * 19 18 17 38 38 H 1.09002 * 109.48206 * 301.17190 * 21 20 19 39 39 H 1.09007 * 109.49370 * 181.14569 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1938 0.0011 10 6 4.0217 -2.6363 0.0010 11 6 5.5517 -2.6362 0.0022 12 6 6.0618 -4.0787 0.0028 13 6 7.5917 -4.0786 0.0033 14 6 8.0949 -3.3682 1.2334 15 8 7.3101 -2.9065 2.0278 16 8 9.4146 -3.2433 1.4438 17 6 8.1051 -5.5219 -0.0001 18 6 9.6348 -5.5078 -0.0773 19 6 10.0679 -4.7342 -1.3254 20 8 9.5317 -3.4107 -1.2737 21 6 8.1038 -3.3602 -1.2478 22 1 -0.4851 0.8400 -0.0004 23 1 3.8745 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 3.6587 -3.1500 -0.8892 26 1 3.6580 -3.1504 0.8908 27 1 5.9142 -2.1228 0.8927 28 1 5.9157 -2.1221 -0.8873 29 1 5.6992 -4.5927 -0.8875 30 1 5.6977 -4.5925 0.8925 31 1 9.6893 -2.7762 2.2446 32 1 7.7907 -6.0228 0.9155 33 1 7.7012 -6.0504 -0.8636 34 1 10.0058 -6.5311 -0.1360 35 1 10.0409 -5.0235 0.8107 36 1 9.6964 -5.2424 -2.2152 37 1 11.1561 -4.6844 -1.3629 38 1 7.7066 -3.8504 -2.1366 39 1 7.7769 -2.3205 -1.2294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691691409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:59 Heat of formation + Delta-G solvation = -185.028270 kcal Electronic energy + Delta-G solvation = -19911.757491 eV Core-core repulsion = 16817.537862 eV Total energy + Delta-G solvation = -3094.219629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10189 -39.63116 -37.66223 -36.62923 -35.47321 -34.23023 -32.90417 -30.31232 -27.00852 -26.17063 -25.46281 -23.91111 -22.21299 -21.62195 -20.56474 -19.03058 -18.86937 -17.73788 -17.10606 -16.92410 -16.41520 -16.27214 -15.88784 -15.36326 -14.84545 -14.78777 -14.63095 -14.19351 -13.95034 -13.65223 -13.45719 -13.24674 -13.11939 -12.80833 -12.73500 -12.21311 -12.12951 -11.95442 -11.87687 -11.74520 -11.48139 -11.34733 -11.14361 -10.97639 -10.94290 -10.77335 -10.38001 -8.31200 -6.34836 1.23945 1.32453 1.35284 1.48025 2.13643 2.34770 2.94394 3.03892 3.53112 3.61204 3.70421 4.07723 4.12047 4.21159 4.26994 4.36325 4.52177 4.60842 4.64941 4.69643 4.76279 4.81115 4.90812 4.93162 4.98594 5.02718 5.15654 5.19372 5.27279 5.28929 5.49969 5.54654 5.64110 5.66967 5.79385 6.28189 6.29552 6.72811 7.07333 7.29968 8.85814 Molecular weight = 256.15amu Principal moments of inertia in cm(-1) A = 0.035843 B = 0.004420 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.995399 B = 6332.991477 C = 6426.496879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.534 4.534 8 H 0.032 0.968 9 C -0.013 4.013 10 C -0.092 4.092 11 C -0.129 4.129 12 C -0.093 4.093 13 C -0.081 4.081 14 C 0.490 3.510 15 O -0.544 6.544 16 O -0.492 6.492 17 C -0.109 4.109 18 C -0.162 4.162 19 C 0.056 3.944 20 O -0.388 6.388 21 C 0.071 3.929 22 H 0.267 0.733 23 H 0.008 0.992 24 H 0.019 0.981 25 H 0.055 0.945 26 H 0.038 0.962 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.415 0.585 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.500 -12.078 -2.382 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.774 3.226 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.051 4.051 10 C -0.130 4.130 11 C -0.166 4.166 12 C -0.131 4.131 13 C -0.082 4.082 14 C 0.333 3.667 15 O -0.435 6.435 16 O -0.304 6.304 17 C -0.147 4.147 18 C -0.199 4.199 19 C -0.020 4.020 20 O -0.306 6.306 21 C -0.006 4.006 22 H 0.075 0.925 23 H 0.026 0.974 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.276 0.724 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 25.159 -11.897 -2.517 27.944 hybrid contribution -0.572 0.973 0.911 1.451 sum 24.587 -10.924 -1.606 26.952 Atomic orbital electron populations 1.70069 1.08209 1.28166 1.52813 1.26027 0.95648 1.03514 0.94104 0.85649 0.79229 0.78301 0.79429 1.18566 1.20682 1.17859 1.21554 0.92246 0.93144 1.50228 0.94974 1.19551 0.93821 0.95732 0.95968 1.21289 0.94779 0.96586 1.00344 1.21880 0.95105 0.97359 1.02235 1.21481 0.90588 0.97261 1.03724 1.21371 0.96828 0.98116 0.91904 1.23545 0.80253 0.76020 0.86834 1.90721 1.57691 1.47296 1.47787 1.84662 1.24626 1.71986 1.49172 1.21710 0.96921 0.91526 1.04507 1.22395 0.94679 1.02264 1.00553 1.22758 0.99751 0.82540 0.96961 1.87984 1.19252 1.28782 1.94590 1.22693 0.81731 1.01392 0.94767 0.92451 0.97392 0.96238 0.92618 0.94304 0.91970 0.91575 0.88352 0.91812 0.72448 0.90990 0.88159 0.88651 0.89977 0.91933 0.87780 0.89422 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.77 13.96 21.44 0.30 -61.47 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 46.55 27.47 68.60 1.88 48.44 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.25 -11.95 6.54 99.48 0.65 -11.30 16 7 C -0.53 -32.57 9.66 25.60 0.25 -32.32 16 8 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 9 C -0.01 -0.67 4.04 29.85 0.12 -0.55 16 10 C -0.09 -3.83 5.15 30.59 0.16 -3.68 16 11 C -0.13 -4.24 4.55 30.59 0.14 -4.10 16 12 C -0.09 -2.32 3.92 30.59 0.12 -2.20 16 13 C -0.08 -1.67 0.53 -52.84 -0.03 -1.70 16 14 C 0.49 12.12 6.60 71.23 0.47 12.59 16 15 O -0.54 -18.01 14.42 21.94 0.32 -17.69 16 16 O -0.49 -9.11 9.46 -45.91 -0.43 -9.55 16 17 C -0.11 -1.60 4.80 30.71 0.15 -1.45 16 18 C -0.16 -1.99 5.68 30.68 0.17 -1.82 16 19 C 0.06 0.73 6.84 72.01 0.49 1.23 16 20 O -0.39 -7.69 9.65 -133.71 -1.29 -8.98 16 21 C 0.07 1.40 5.10 72.01 0.37 1.76 16 22 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 23 H 0.01 0.40 7.20 -2.39 -0.02 0.38 16 24 H 0.02 0.93 7.57 -2.39 -0.02 0.92 16 25 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.06 2.34 5.52 -2.39 -0.01 2.33 16 28 H 0.07 1.98 6.49 -2.39 -0.02 1.97 16 29 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 1.72 8.10 -2.38 -0.02 1.70 16 31 H 0.42 4.72 9.10 -74.06 -0.67 4.05 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 1.21 5.55 -2.39 -0.01 1.20 16 36 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.99 6.57 -2.38 -0.02 1.98 16 Total: -1.00 -76.34 303.76 3.96 -72.38 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.31 Total: 8.43 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 2.87 Total: -31.56 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 0.30 Total: -61.47 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -1.41 Total: -36.22 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.44 kcal Total: -76.34 3.96 -72.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691691409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.650 kcal (2) G-P(sol) polarization free energy of solvation -76.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds