Wall clock time and date at job start Mon Mar 30 2020 06:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86804 * 119.99846 * 2 1 4 4 H 1.48499 * 109.46764 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47240 * 300.00072 * 3 2 1 6 6 H 1.48500 * 109.46769 * 60.00301 * 3 2 1 7 7 C 1.40182 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.39871 * 119.99702 * 0.02562 * 7 2 1 10 10 N 1.31500 * 125.26869 * 359.68952 * 9 7 2 11 11 C 1.31157 * 116.39494 * 180.48614 * 10 9 7 12 12 C 1.39058 * 113.98802 * 359.45669 * 11 10 9 13 13 S 1.70225 * 109.46393 * 0.60081 * 12 11 10 14 14 C 1.50921 * 122.61858 * 181.05361 * 12 11 10 15 15 C 1.52685 * 109.63204 * 327.96566 * 14 12 11 16 16 C 1.50347 * 112.24644 * 46.94975 * 15 14 12 17 17 C 1.38298 * 119.87084 * 144.15414 * 16 15 14 18 18 C 1.38266 * 120.15537 * 178.49590 * 17 16 15 19 19 C 1.38387 * 120.70989 * 359.81420 * 18 17 16 20 20 C 1.38228 * 119.83693 * 0.75655 * 19 18 17 21 21 C 1.38776 * 119.39061 * 0.07342 * 20 19 18 22 22 H 0.96999 * 120.00118 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.44351 * 88.01655 * 14 12 11 24 24 H 1.08998 * 109.44629 * 207.94931 * 14 12 11 25 25 H 1.09002 * 108.92503 * 167.66048 * 15 14 12 26 26 H 1.09002 * 108.92325 * 286.32529 * 15 14 12 27 27 H 1.08002 * 119.91828 * 358.46599 * 17 16 15 28 28 H 1.07995 * 119.64885 * 179.82326 * 18 17 16 29 29 H 1.08001 * 120.08270 * 180.78015 * 19 18 17 30 30 H 1.08002 * 120.29922 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8825 2.3965 -1.2125 6 1 1.8825 2.3964 1.2126 7 6 2.0082 -1.2140 0.0005 8 1 3.0882 -1.2139 0.0001 9 6 1.3089 -2.4253 0.0005 10 7 -0.0006 -2.5460 0.0059 11 6 -0.4733 -3.7694 0.0148 12 6 0.5079 -4.7547 0.0052 13 16 2.0454 -4.0241 0.0012 14 6 0.1812 -6.2281 -0.0104 15 6 -1.1205 -6.4729 0.7491 16 6 -2.2024 -5.5082 0.3500 17 6 -3.5172 -5.9331 0.2925 18 6 -4.5207 -5.0432 -0.0436 19 6 -4.2275 -3.7198 -0.3224 20 6 -2.9169 -3.2823 -0.2808 21 6 -1.9089 -4.1805 0.0399 22 1 -0.4850 0.8400 0.0004 23 1 0.0686 -6.5639 -1.0413 24 1 0.9888 -6.7839 0.4661 25 1 -1.4611 -7.4888 0.5485 26 1 -0.9315 -6.3681 1.8175 27 1 -3.7607 -6.9626 0.5101 28 1 -5.5443 -5.3845 -0.0889 29 1 -5.0207 -3.0305 -0.5716 30 1 -2.6797 -2.2510 -0.4967 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019485309.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:02 Heat of formation + Delta-G solvation = 40.032673 kcal Electronic energy + Delta-G solvation = -16008.403015 eV Core-core repulsion = 13472.745546 eV Total energy + Delta-G solvation = -2535.657469 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.30742 -37.05139 -34.56326 -33.39801 -30.76743 -29.47682 -28.42365 -26.03610 -23.10474 -22.53997 -21.64842 -20.36069 -18.34775 -16.67760 -16.19669 -15.57004 -15.18753 -14.65998 -14.32292 -13.83893 -13.26187 -12.91457 -12.74908 -12.54461 -12.32468 -11.83320 -11.77347 -11.43701 -11.13482 -10.96806 -10.91706 -10.61001 -10.37794 -10.16407 -9.58149 -9.52581 -8.58902 -8.20794 -7.73328 -7.70061 -7.01470 -6.75624 -4.63253 1.59425 1.90866 2.55732 2.95122 3.00914 3.02683 3.22870 3.62957 3.80394 4.08478 4.61236 5.18240 5.25165 5.32382 5.37647 5.58436 5.65073 5.82237 5.86243 5.99760 6.20427 6.30103 6.43056 6.55179 6.63506 6.66294 6.78385 6.92402 6.94972 7.04225 7.38413 7.51102 7.56970 7.93861 8.18361 8.50898 9.85270 10.02678 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.025032 B = 0.007307 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.301111 B = 3831.230704 C = 4892.861861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.070 3.930 3 Si 0.921 3.079 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.384 4.384 8 H 0.096 0.904 9 C 0.233 3.767 10 N -0.518 5.518 11 C 0.151 3.849 12 C -0.396 4.396 13 S -0.062 6.062 14 C -0.002 4.002 15 C -0.069 4.069 16 C -0.072 4.072 17 C -0.129 4.129 18 C -0.132 4.132 19 C -0.132 4.132 20 C -0.087 4.087 21 C 0.009 3.991 22 H 0.282 0.718 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -4.806 0.246 6.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.160 4.160 3 Si 0.744 3.256 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.427 4.427 8 H 0.114 0.886 9 C -0.019 4.019 10 N -0.235 5.235 11 C 0.010 3.990 12 C -0.521 4.521 13 S 0.199 5.801 14 C -0.042 4.042 15 C -0.107 4.107 16 C -0.074 4.074 17 C -0.147 4.147 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.106 4.106 21 C 0.006 3.994 22 H 0.093 0.907 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.236 -4.628 0.238 5.653 hybrid contribution -0.644 0.485 -0.002 0.806 sum -3.880 -4.143 0.236 5.681 Atomic orbital electron populations 1.70018 1.07459 1.28948 1.26142 1.26085 0.95091 1.01120 0.93749 0.86035 0.80722 0.79949 0.78895 1.17997 1.19446 1.19455 1.19047 0.94748 0.87984 1.40905 0.88601 1.23931 0.89046 0.92914 0.96046 1.67008 1.09441 1.18249 1.28847 1.19722 0.91852 0.88133 0.99281 1.24561 0.95462 0.98696 1.33399 1.82732 1.10926 1.07426 1.79029 1.19327 0.95059 0.91145 0.98653 1.20244 0.93519 0.96490 1.00427 1.19891 0.94276 0.93766 0.99441 1.20866 0.92167 0.99188 1.02460 1.20973 0.98505 0.93886 1.01736 1.21110 0.96378 0.95722 1.01838 1.21273 0.91552 1.00303 0.97459 1.18333 0.91049 0.92153 0.97837 0.90718 0.93198 0.92482 0.91546 0.91146 0.86648 0.86939 0.86532 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.92 11.85 55.56 0.66 -17.26 16 2 C 0.07 1.67 5.50 -17.29 -0.10 1.58 16 3 Si 0.92 17.42 29.56 -169.99 -5.03 12.40 16 4 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.38 -9.80 9.38 -38.24 -0.36 -10.16 16 8 H 0.10 2.25 7.85 -52.49 -0.41 1.84 16 9 C 0.23 6.30 7.05 -17.08 -0.12 6.18 16 10 N -0.52 -14.44 8.60 -8.74 -0.08 -14.51 16 11 C 0.15 3.89 6.79 -83.22 -0.56 3.32 16 12 C -0.40 -9.49 6.30 -33.90 -0.21 -9.70 16 13 S -0.06 -1.50 23.11 -107.50 -2.48 -3.98 16 14 C 0.00 -0.04 6.29 -27.94 -0.18 -0.22 16 15 C -0.07 -1.18 5.79 -28.22 -0.16 -1.35 16 16 C -0.07 -1.38 5.69 -104.31 -0.59 -1.98 16 17 C -0.13 -2.07 9.65 -39.55 -0.38 -2.45 16 18 C -0.13 -2.03 10.01 -39.52 -0.40 -2.43 16 19 C -0.13 -2.24 10.06 -39.53 -0.40 -2.63 16 20 C -0.09 -1.80 9.78 -39.39 -0.39 -2.19 16 21 C 0.01 0.20 5.87 -104.61 -0.61 -0.42 16 22 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.12 1.50 8.04 -52.49 -0.42 1.08 16 28 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.14 3.01 8.05 -52.49 -0.42 2.59 16 LS Contribution 273.38 15.07 4.12 4.12 Total: -1.00 -28.94 273.38 -10.19 -39.13 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -2.92 Total: 2.55 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -4.46 Total: -22.44 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.58 Total: -31.77 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.40 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.48 Total: -3.98 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.94 -10.19 -39.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019485309.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.160 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds