Wall clock time and date at job start Mon Mar 30 2020 06:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86804 * 119.99846 * 2 1 4 4 H 1.48499 * 109.46764 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47240 * 300.00072 * 3 2 1 6 6 H 1.48500 * 109.46769 * 60.00301 * 3 2 1 7 7 C 1.40182 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.39871 * 119.99702 * 0.02562 * 7 2 1 10 10 N 1.31500 * 125.26869 * 359.68952 * 9 7 2 11 11 C 1.31157 * 116.39494 * 180.48614 * 10 9 7 12 12 C 1.39058 * 113.98802 * 359.45669 * 11 10 9 13 13 S 1.70225 * 109.46393 * 0.60081 * 12 11 10 14 14 C 1.50921 * 122.61858 * 181.05361 * 12 11 10 15 15 C 1.52685 * 109.63204 * 327.96566 * 14 12 11 16 16 C 1.50347 * 112.24644 * 46.94975 * 15 14 12 17 17 C 1.38298 * 119.87084 * 144.15414 * 16 15 14 18 18 C 1.38266 * 120.15537 * 178.49590 * 17 16 15 19 19 C 1.38387 * 120.70989 * 359.81420 * 18 17 16 20 20 C 1.38228 * 119.83693 * 0.75655 * 19 18 17 21 21 C 1.38776 * 119.39061 * 0.07342 * 20 19 18 22 22 H 0.96999 * 120.00118 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.44351 * 88.01655 * 14 12 11 24 24 H 1.08998 * 109.44629 * 207.94931 * 14 12 11 25 25 H 1.09002 * 108.92503 * 167.66048 * 15 14 12 26 26 H 1.09002 * 108.92325 * 286.32529 * 15 14 12 27 27 H 1.08002 * 119.91828 * 358.46599 * 17 16 15 28 28 H 1.07995 * 119.64885 * 179.82326 * 18 17 16 29 29 H 1.08001 * 120.08270 * 180.78015 * 19 18 17 30 30 H 1.08002 * 120.29922 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8825 2.3965 -1.2125 6 1 1.8825 2.3964 1.2126 7 6 2.0082 -1.2140 0.0005 8 1 3.0882 -1.2139 0.0001 9 6 1.3089 -2.4253 0.0005 10 7 -0.0006 -2.5460 0.0059 11 6 -0.4733 -3.7694 0.0148 12 6 0.5079 -4.7547 0.0052 13 16 2.0454 -4.0241 0.0012 14 6 0.1812 -6.2281 -0.0104 15 6 -1.1205 -6.4729 0.7491 16 6 -2.2024 -5.5082 0.3500 17 6 -3.5172 -5.9331 0.2925 18 6 -4.5207 -5.0432 -0.0436 19 6 -4.2275 -3.7198 -0.3224 20 6 -2.9169 -3.2823 -0.2808 21 6 -1.9089 -4.1805 0.0399 22 1 -0.4850 0.8400 0.0004 23 1 0.0686 -6.5639 -1.0413 24 1 0.9888 -6.7839 0.4661 25 1 -1.4611 -7.4888 0.5485 26 1 -0.9315 -6.3681 1.8175 27 1 -3.7607 -6.9626 0.5101 28 1 -5.5443 -5.3845 -0.0889 29 1 -5.0207 -3.0305 -0.5716 30 1 -2.6797 -2.2510 -0.4967 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019485309.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:01 Heat of formation + Delta-G solvation = 24.320469 kcal Electronic energy + Delta-G solvation = -16009.084347 eV Core-core repulsion = 13472.745546 eV Total energy + Delta-G solvation = -2536.338801 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82770 -38.78955 -36.17759 -35.11246 -32.29805 -30.94084 -30.18307 -27.74258 -24.76736 -24.09561 -23.24524 -21.94463 -20.00573 -18.43927 -17.98169 -17.05015 -16.85223 -16.12176 -15.83290 -15.39467 -14.88404 -14.42518 -14.34800 -14.26538 -13.77695 -13.38645 -13.25926 -13.00646 -12.86393 -12.52905 -12.40369 -12.15701 -11.88735 -11.71342 -11.30910 -11.21022 -10.18302 -9.66927 -9.62179 -9.57554 -8.77821 -8.58172 -6.56811 0.03553 0.51984 0.84336 1.25611 1.42155 1.50604 1.59424 1.74535 2.17386 2.43279 2.97187 3.37922 3.76836 3.87526 4.03169 4.25549 4.32009 4.39375 4.54446 4.60567 4.76207 4.83036 4.89586 5.04461 5.07186 5.17846 5.28831 5.35431 5.47959 5.63021 5.72044 5.88111 6.07514 6.18236 6.30216 6.59469 7.96608 8.23568 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.025032 B = 0.007307 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.301111 B = 3831.230704 C = 4892.861861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.025 3.975 3 Si 1.006 2.994 4 H -0.246 1.246 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.410 4.410 8 H 0.107 0.893 9 C 0.194 3.806 10 N -0.554 5.554 11 C 0.119 3.881 12 C -0.406 4.406 13 S -0.056 6.056 14 C -0.003 4.003 15 C -0.065 4.065 16 C -0.084 4.084 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.114 4.114 21 C -0.036 4.036 22 H 0.290 0.710 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.143 0.857 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -6.396 0.481 8.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.201 4.201 3 Si 0.823 3.177 4 H -0.169 1.169 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.453 4.453 8 H 0.125 0.875 9 C -0.058 4.058 10 N -0.272 5.272 11 C -0.021 4.021 12 C -0.530 4.530 13 S 0.204 5.796 14 C -0.043 4.043 15 C -0.103 4.103 16 C -0.085 4.085 17 C -0.136 4.136 18 C -0.135 4.135 19 C -0.147 4.147 20 C -0.133 4.133 21 C -0.038 4.038 22 H 0.100 0.900 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.130 0.870 26 H 0.086 0.914 27 H 0.178 0.822 28 H 0.177 0.823 29 H 0.161 0.839 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.721 -6.257 0.473 7.853 hybrid contribution -0.296 0.886 -0.090 0.939 sum -5.017 -5.371 0.383 7.360 Atomic orbital electron populations 1.70125 1.09453 1.30504 1.26835 1.27201 0.95847 1.04697 0.92372 0.84814 0.79424 0.74304 0.79132 1.16868 1.18683 1.18719 1.19525 0.95507 0.88652 1.41646 0.87455 1.24476 0.89660 0.94578 0.97094 1.67002 1.10116 1.20054 1.30073 1.20407 0.94288 0.87902 0.99495 1.25244 0.94658 1.01034 1.32078 1.82435 1.11498 1.06394 1.79243 1.19495 0.97071 0.88055 0.99685 1.20290 0.91869 0.98370 0.99764 1.20196 0.96470 0.92455 0.99379 1.21364 0.90585 1.01337 1.00275 1.21515 1.00700 0.92562 0.98685 1.21404 0.94976 0.97478 1.00859 1.21144 0.93605 0.98773 0.99775 1.18569 0.89609 0.94411 1.01237 0.89956 0.92625 0.90926 0.87018 0.91351 0.82230 0.82263 0.83886 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.09 11.85 21.87 0.26 -39.83 16 2 C 0.02 1.23 5.50 85.33 0.47 1.70 16 3 Si 1.01 36.28 29.56 68.60 2.03 38.31 16 4 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 5 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 6 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 7 C -0.41 -21.92 9.38 23.14 0.22 -21.71 16 8 H 0.11 5.23 7.85 -2.91 -0.02 5.20 16 9 C 0.19 11.11 7.05 85.14 0.60 11.71 16 10 N -0.55 -32.94 8.60 -181.57 -1.56 -34.50 16 11 C 0.12 6.41 6.79 42.44 0.29 6.69 16 12 C -0.41 -19.96 6.30 25.95 0.16 -19.80 16 13 S -0.06 -2.83 23.11 -56.49 -1.31 -4.13 16 14 C 0.00 -0.13 6.29 29.81 0.19 0.06 16 15 C -0.06 -2.07 5.79 29.63 0.17 -1.90 16 16 C -0.08 -3.04 5.69 -19.66 -0.11 -3.15 16 17 C -0.12 -3.25 9.65 22.29 0.22 -3.04 16 18 C -0.12 -3.05 10.01 22.31 0.22 -2.83 16 19 C -0.13 -4.15 10.06 22.30 0.22 -3.93 16 20 C -0.11 -4.91 9.78 22.40 0.22 -4.69 16 21 C -0.04 -1.65 5.87 -19.86 -0.12 -1.77 16 22 H 0.29 13.82 8.29 -92.71 -0.77 13.05 16 23 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.11 2.55 8.00 -2.39 -0.02 2.53 16 26 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.16 3.02 8.04 -2.91 -0.02 3.00 16 28 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.10 4.85 8.05 -2.91 -0.02 4.83 16 Total: -1.00 -68.88 273.38 3.33 -65.55 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 1.16 Total: 17.25 kcal Atomic # 6 Polarization: -45.40 SS G_CDS: 2.75 Total: -42.65 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -1.30 Total: -74.33 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -1.31 Total: -4.13 kcal Total: -68.88 3.33 -65.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019485309.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.869 kcal (2) G-P(sol) polarization free energy of solvation -68.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds