Wall clock time and date at job start Mon Mar 30 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47131 * 270.00360 * 3 2 1 5 5 H 1.48499 * 109.46732 * 29.99822 * 3 2 1 6 6 H 1.48498 * 109.46936 * 149.99889 * 3 2 1 7 7 C 1.37876 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00045 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46781 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.46609 * 180.02562 * 10 9 7 12 12 C 1.76207 * 102.99890 * 180.02562 * 11 10 9 13 13 C 1.38712 * 120.08592 * 0.27286 * 12 11 10 14 14 C 1.38250 * 120.00462 * 180.23790 * 13 12 11 15 15 C 1.38370 * 120.18117 * 359.48643 * 14 13 12 16 16 Cl 1.73603 * 119.90788 * 180.23768 * 15 14 13 17 17 C 1.38377 * 120.18096 * 0.26026 * 15 14 13 18 18 C 1.38649 * 119.98736 * 359.97438 * 17 15 14 19 19 N 1.40000 * 120.08811 * 179.97438 * 18 17 15 20 20 H 0.97000 * 119.99740 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47002 * 59.99705 * 9 7 2 22 22 H 1.08992 * 109.47126 * 299.99757 * 9 7 2 23 23 H 1.08999 * 109.46727 * 60.00112 * 10 9 7 24 24 H 1.09000 * 109.47309 * 299.99727 * 10 9 7 25 25 H 1.08003 * 119.99901 * 0.02562 * 13 12 11 26 26 H 1.08002 * 119.91219 * 179.77182 * 14 13 12 27 27 H 1.07996 * 120.00340 * 180.02562 * 17 15 14 28 28 H 0.97006 * 119.99866 * 0.02562 * 19 18 17 29 29 H 0.97004 * 120.00262 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 16 5.8355 -2.6366 0.0014 12 6 6.2319 -4.3535 0.0003 13 6 5.2188 -5.3010 -0.0070 14 6 5.5317 -6.6476 -0.0029 15 6 6.8542 -7.0545 -0.0022 16 17 7.2391 -8.7473 -0.0032 17 6 7.8709 -6.1158 -0.0002 18 6 7.5654 -4.7634 0.0006 19 7 8.5923 -3.8118 0.0032 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6808 0.8905 22 1 3.8752 -0.6797 -0.8894 23 1 3.6584 -3.1501 -0.8903 24 1 3.6578 -3.1506 0.8897 25 1 4.1855 -4.9868 -0.0125 26 1 4.7418 -7.3841 -0.0049 27 1 8.9021 -6.4365 0.0000 28 1 9.5190 -4.0984 0.0040 29 1 8.3771 -2.8659 0.0041 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019815441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:49 Heat of formation + Delta-G solvation = 2.269320 kcal Electronic energy + Delta-G solvation = -13853.749380 eV Core-core repulsion = 11314.021520 eV Total energy + Delta-G solvation = -2539.727861 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34510 -36.61087 -34.56486 -33.77976 -31.45454 -30.78019 -28.72127 -25.72276 -23.00548 -22.42421 -20.77887 -17.68672 -17.24352 -16.93910 -16.68162 -15.04670 -14.54239 -14.41439 -14.28262 -13.95049 -13.71698 -13.55811 -12.78090 -12.29515 -12.19307 -11.84783 -11.53042 -11.29548 -10.97328 -10.60821 -10.40696 -10.17574 -10.12346 -9.71975 -9.36855 -9.31225 -8.66070 -8.08561 -6.92192 -6.16412 -4.17289 1.07308 1.44463 1.83815 2.08542 2.85231 3.24622 3.32487 3.35711 3.60945 3.79185 4.35090 4.73679 5.09990 5.16982 5.28050 5.42655 5.71013 5.72423 5.78879 5.87450 6.15920 6.26765 6.39335 6.56688 6.97453 7.10426 7.27566 7.57498 7.63049 8.35826 8.84798 9.43435 10.96113 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.039648 B = 0.004269 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.037342 B = 6557.052572 C = 7242.642423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.075 0.925 9 C 0.003 3.997 10 C -0.067 4.067 11 S -0.154 6.154 12 C -0.143 4.143 13 C -0.075 4.075 14 C -0.148 4.148 15 C 0.003 3.997 16 Cl -0.079 7.079 17 C -0.180 4.180 18 C 0.243 3.757 19 N -0.868 5.868 20 H 0.266 0.734 21 H 0.027 0.973 22 H 0.023 0.977 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.398 0.602 29 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.609 -11.644 0.015 20.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.093 0.907 9 C -0.037 4.037 10 C -0.215 4.215 11 S 0.091 5.909 12 C -0.261 4.261 13 C -0.100 4.100 14 C -0.170 4.170 15 C -0.027 4.027 16 Cl -0.050 7.050 17 C -0.206 4.206 18 C 0.132 3.868 19 N -0.408 5.408 20 H 0.076 0.924 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.156 0.844 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.227 0.773 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 17.144 -10.622 0.019 20.168 hybrid contribution -0.186 -0.167 -0.022 0.252 sum 16.958 -10.790 -0.003 20.100 Atomic orbital electron populations 1.69891 1.06253 1.27193 1.50125 1.24963 0.94760 0.99163 0.94190 0.86791 0.80436 0.83500 0.78748 1.20054 1.21117 1.18853 1.20907 0.88198 0.94865 1.52230 0.90666 1.19384 0.97496 0.89118 0.97654 1.23806 0.87764 1.05123 1.04833 1.85100 1.12833 1.00919 1.92080 1.21404 0.94262 0.98487 1.11913 1.21056 0.98901 0.91753 0.98325 1.20712 0.94433 0.95882 1.06000 1.20509 0.94157 0.84082 1.03978 1.98350 1.94698 1.15027 1.96959 1.20207 0.98923 0.89975 1.11466 1.17053 0.86896 0.88666 0.94212 1.42542 1.06197 1.07666 1.84414 0.92443 0.95460 0.95891 0.89884 0.89864 0.84429 0.85062 0.85078 0.77306 0.76467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.96 55.43 0.77 -26.07 15 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 3 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 15 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.26 -6.12 6.54 56.52 0.37 -5.75 15 7 C -0.52 -14.29 9.66 -34.44 -0.33 -14.62 15 8 H 0.08 2.19 7.99 -52.48 -0.42 1.77 15 9 C 0.00 0.06 4.05 -27.88 -0.11 -0.05 15 10 C -0.07 -1.28 4.27 37.16 0.16 -1.12 15 11 S -0.15 -2.54 20.44 -107.50 -2.20 -4.74 15 12 C -0.14 -2.14 6.12 -38.93 -0.24 -2.37 15 13 C -0.08 -1.07 9.36 -39.40 -0.37 -1.44 15 14 C -0.15 -1.89 9.82 -39.53 -0.39 -2.28 15 15 C 0.00 0.03 6.32 -39.48 -0.25 -0.22 15 16 Cl -0.08 -0.86 28.95 -51.86 -1.50 -2.36 15 17 C -0.18 -2.12 9.67 -39.38 -0.38 -2.50 15 18 C 0.24 3.13 6.76 -83.50 -0.56 2.57 15 19 N -0.87 -9.00 9.04 32.54 0.29 -8.70 15 20 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 21 H 0.03 0.63 7.20 -51.93 -0.37 0.26 15 22 H 0.02 0.53 7.57 -51.93 -0.39 0.13 15 23 H 0.08 1.54 7.73 -51.93 -0.40 1.14 15 24 H 0.08 1.54 7.76 -51.92 -0.40 1.14 15 25 H 0.14 1.95 5.87 -52.48 -0.31 1.64 15 26 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 27 H 0.13 1.26 8.06 -52.49 -0.42 0.83 15 28 H 0.40 2.96 8.85 -40.82 -0.36 2.59 15 29 H 0.40 4.36 7.38 -40.82 -0.30 4.05 15 LS Contribution 276.89 15.07 4.17 4.17 Total: -1.00 -29.24 276.89 -8.68 -37.91 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -2.97 Total: 3.47 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.57 Total: -20.11 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 1.07 Total: -34.77 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -2.20 Total: -4.74 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.24 -8.68 -37.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019815441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.181 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds