Wall clock time and date at job start Mon Mar 30 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47131 * 270.00360 * 3 2 1 5 5 H 1.48499 * 109.46732 * 29.99822 * 3 2 1 6 6 H 1.48498 * 109.46936 * 149.99889 * 3 2 1 7 7 C 1.37876 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00045 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46781 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.46609 * 180.02562 * 10 9 7 12 12 C 1.76207 * 102.99890 * 180.02562 * 11 10 9 13 13 C 1.38712 * 120.08592 * 0.27286 * 12 11 10 14 14 C 1.38250 * 120.00462 * 180.23790 * 13 12 11 15 15 C 1.38370 * 120.18117 * 359.48643 * 14 13 12 16 16 Cl 1.73603 * 119.90788 * 180.23768 * 15 14 13 17 17 C 1.38377 * 120.18096 * 0.26026 * 15 14 13 18 18 C 1.38649 * 119.98736 * 359.97438 * 17 15 14 19 19 N 1.40000 * 120.08811 * 179.97438 * 18 17 15 20 20 H 0.97000 * 119.99740 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47002 * 59.99705 * 9 7 2 22 22 H 1.08992 * 109.47126 * 299.99757 * 9 7 2 23 23 H 1.08999 * 109.46727 * 60.00112 * 10 9 7 24 24 H 1.09000 * 109.47309 * 299.99727 * 10 9 7 25 25 H 1.08003 * 119.99901 * 0.02562 * 13 12 11 26 26 H 1.08002 * 119.91219 * 179.77182 * 14 13 12 27 27 H 1.07996 * 120.00340 * 180.02562 * 17 15 14 28 28 H 0.97006 * 119.99866 * 0.02562 * 19 18 17 29 29 H 0.97004 * 120.00262 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 16 5.8355 -2.6366 0.0014 12 6 6.2319 -4.3535 0.0003 13 6 5.2188 -5.3010 -0.0070 14 6 5.5317 -6.6476 -0.0029 15 6 6.8542 -7.0545 -0.0022 16 17 7.2391 -8.7473 -0.0032 17 6 7.8709 -6.1158 -0.0002 18 6 7.5654 -4.7634 0.0006 19 7 8.5923 -3.8118 0.0032 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6808 0.8905 22 1 3.8752 -0.6797 -0.8894 23 1 3.6584 -3.1501 -0.8903 24 1 3.6578 -3.1506 0.8897 25 1 4.1855 -4.9868 -0.0125 26 1 4.7418 -7.3841 -0.0049 27 1 8.9021 -6.4365 0.0000 28 1 9.5190 -4.0984 0.0040 29 1 8.3771 -2.8659 0.0041 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019815441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:49 Heat of formation + Delta-G solvation = -14.890303 kcal Electronic energy + Delta-G solvation = -13854.493477 eV Core-core repulsion = 11314.021520 eV Total energy + Delta-G solvation = -2540.471958 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.33351 -37.52964 -35.89310 -35.35200 -33.34924 -31.87742 -29.67814 -27.62091 -24.02783 -23.66310 -22.41775 -19.16660 -18.72386 -18.04568 -17.73697 -16.45653 -16.08466 -15.82328 -15.43437 -15.08548 -14.89198 -14.81402 -14.67964 -13.78323 -13.25816 -13.22604 -13.01318 -12.64659 -12.22320 -11.94698 -11.90546 -11.81269 -11.55385 -11.51111 -11.06684 -10.80777 -10.43557 -9.08425 -8.32887 -8.07121 -6.38921 0.04352 0.44748 0.56558 1.11588 1.36301 1.37840 1.49357 1.52793 2.33702 2.59350 2.91344 3.02186 3.74718 4.14150 4.15425 4.19033 4.30499 4.42391 4.69420 4.77868 4.84813 5.14314 5.17467 5.26490 5.26952 5.52556 5.58145 6.18757 6.37090 6.67078 6.87703 7.25478 8.82975 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.039648 B = 0.004269 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.037342 B = 6557.052572 C = 7242.642423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.010 3.990 3 Si 0.946 3.054 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.531 4.531 8 H 0.040 0.960 9 C 0.007 3.993 10 C -0.066 4.066 11 S -0.140 6.140 12 C -0.169 4.169 13 C -0.085 4.085 14 C -0.155 4.155 15 C 0.003 3.997 16 Cl -0.064 7.064 17 C -0.176 4.176 18 C 0.244 3.756 19 N -0.858 5.858 20 H 0.268 0.732 21 H 0.028 0.972 22 H 0.027 0.973 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.144 0.856 27 H 0.158 0.842 28 H 0.414 0.586 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.396 -11.872 0.004 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.769 3.231 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.171 1.171 7 C -0.571 4.571 8 H 0.058 0.942 9 C -0.031 4.031 10 C -0.215 4.215 11 S 0.104 5.896 12 C -0.287 4.287 13 C -0.110 4.110 14 C -0.178 4.178 15 C -0.027 4.027 16 Cl -0.035 7.035 17 C -0.202 4.202 18 C 0.131 3.869 19 N -0.398 5.398 20 H 0.077 0.923 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.147 0.853 26 H 0.162 0.838 27 H 0.175 0.825 28 H 0.245 0.755 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 19.971 -10.876 0.008 22.740 hybrid contribution -1.002 -0.297 -0.020 1.045 sum 18.969 -11.172 -0.012 22.015 Atomic orbital electron populations 1.70040 1.08171 1.28361 1.51863 1.25928 0.95609 1.03353 0.93872 0.85711 0.79563 0.78420 0.79360 1.19024 1.20745 1.17055 1.21238 0.90823 0.93608 1.51383 0.94184 1.19220 0.94537 0.91740 0.97648 1.23481 0.90775 1.02528 1.04688 1.84807 1.09193 1.02786 1.92834 1.21429 0.95432 0.97241 1.14570 1.21072 0.98561 0.92536 0.98824 1.20848 0.95343 0.95503 1.06074 1.20661 0.94093 0.85064 1.02872 1.98360 1.94555 1.13775 1.96812 1.20476 1.00119 0.89284 1.10277 1.17160 0.86562 0.89583 0.93557 1.42528 1.06639 1.07241 1.83432 0.92259 0.95326 0.95439 0.90143 0.90173 0.85288 0.83836 0.82474 0.75453 0.76577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.06 13.96 21.45 0.30 -57.76 15 2 C 0.01 0.60 5.47 84.65 0.46 1.06 15 3 Si 0.95 43.27 27.47 68.60 1.88 45.16 15 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.25 -10.54 6.54 99.48 0.65 -9.88 15 7 C -0.53 -29.79 9.66 25.60 0.25 -29.54 15 8 H 0.04 2.45 7.99 -2.91 -0.02 2.42 15 9 C 0.01 0.34 4.05 29.85 0.12 0.46 15 10 C -0.07 -2.54 4.27 71.98 0.31 -2.23 15 11 S -0.14 -4.44 20.44 -56.49 -1.15 -5.60 15 12 C -0.17 -4.83 6.12 22.69 0.14 -4.69 15 13 C -0.09 -2.39 9.36 22.39 0.21 -2.18 15 14 C -0.16 -3.77 9.82 22.30 0.22 -3.55 15 15 C 0.00 0.07 6.32 22.33 0.14 0.21 15 16 Cl -0.06 -1.23 28.95 -2.72 -0.08 -1.31 15 17 C -0.18 -3.64 9.67 22.40 0.22 -3.43 15 18 C 0.24 5.72 6.76 38.24 0.26 5.98 15 19 N -0.86 -15.44 9.04 -50.96 -0.46 -15.90 15 20 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 21 H 0.03 1.30 7.20 -2.39 -0.02 1.28 15 22 H 0.03 1.23 7.57 -2.39 -0.02 1.21 15 23 H 0.08 3.05 7.73 -2.39 -0.02 3.03 15 24 H 0.08 3.05 7.76 -2.39 -0.02 3.03 15 25 H 0.13 3.74 5.87 -2.91 -0.02 3.72 15 26 H 0.14 3.02 8.06 -2.91 -0.02 3.00 15 27 H 0.16 2.39 8.06 -2.91 -0.02 2.36 15 28 H 0.41 4.79 8.85 -92.70 -0.82 3.97 15 29 H 0.40 7.71 7.38 -92.71 -0.68 7.02 15 Total: -1.00 -62.88 276.89 2.44 -60.43 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -0.37 Total: 12.88 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 2.32 Total: -37.91 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -0.16 Total: -73.65 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -1.15 Total: -5.60 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -62.88 2.44 -60.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019815441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.543 kcal (2) G-P(sol) polarization free energy of solvation -62.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds