Wall clock time and date at job start Mon Mar 30 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36002 * 116.99676 * 2 1 4 4 C 1.38540 * 119.96295 * 359.97438 * 3 2 1 5 5 C 1.38921 * 119.92099 * 179.76691 * 4 3 2 6 6 N 1.39414 * 120.07040 * 180.25195 * 5 4 3 7 7 C 1.36807 * 120.00355 * 0.23153 * 6 5 4 8 8 H 1.08001 * 120.00232 * 0.02562 * 7 6 5 9 9 C 1.38751 * 120.00212 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00066 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99862 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47337 * 60.00254 * 11 9 7 13 13 H 1.48507 * 109.46960 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47371 * 299.99885 * 11 9 7 15 15 C 1.39546 * 119.85382 * 0.48184 * 5 4 3 16 16 O 1.36017 * 120.03758 * 179.78896 * 15 5 4 17 17 C 1.42903 * 117.00154 * 179.72254 * 16 15 5 18 18 C 1.38459 * 119.92669 * 359.51714 * 15 5 4 19 19 C 1.38368 * 120.07660 * 0.25089 * 18 15 5 20 20 Cl 1.73592 * 119.92935 * 179.97438 * 19 18 15 21 21 H 1.09001 * 109.47296 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47660 * 299.99552 * 1 2 3 23 23 H 1.08996 * 109.47726 * 60.00137 * 1 2 3 24 24 H 1.07993 * 120.03881 * 359.97438 * 4 3 2 25 25 H 0.96999 * 119.99888 * 180.23692 * 6 5 4 26 26 H 0.97004 * 120.00284 * 180.02562 * 10 9 7 27 27 H 1.09002 * 109.47382 * 300.00360 * 17 16 15 28 28 H 1.09001 * 109.46938 * 180.02562 * 17 16 15 29 29 H 1.09004 * 109.46926 * 60.00467 * 17 16 15 30 30 H 1.08001 * 119.96227 * 180.22874 * 18 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2910 2.3732 -0.0005 5 6 1.9225 3.6105 0.0044 6 7 1.1654 4.7812 0.0091 7 6 -0.2009 4.7123 0.0138 8 1 -0.6931 3.7509 0.0142 9 6 -0.9544 5.8774 0.0180 10 7 -0.3546 7.0490 0.0170 11 14 -2.8200 5.7831 0.0237 12 1 -3.2753 5.0571 1.2364 13 1 -3.3850 7.1565 0.0270 14 1 -3.2829 5.0610 -1.1886 15 6 3.3163 3.6791 -0.0004 16 8 3.9384 4.8886 0.0001 17 6 5.3675 4.8832 0.0012 18 6 4.0652 2.5145 0.0002 19 6 3.4331 1.2836 0.0002 20 17 4.3758 -0.1740 0.0002 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 0.2125 2.3166 -0.0014 25 1 1.6074 5.6446 0.0091 26 1 -0.8813 7.8635 0.0204 27 1 5.7282 4.3679 0.8915 28 1 5.7347 5.9094 0.0019 29 1 5.7295 4.3679 -0.8885 30 1 5.1439 2.5669 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020043285.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:51 Heat of formation + Delta-G solvation = -53.898552 kcal Electronic energy + Delta-G solvation = -16941.079082 eV Core-core repulsion = 13956.162729 eV Total energy + Delta-G solvation = -2984.916353 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.65925 -38.26234 -36.34065 -35.74860 -34.31924 -31.96799 -28.81240 -28.43339 -27.38257 -25.91216 -24.55404 -21.29844 -21.12237 -18.19331 -17.66377 -17.01585 -15.82997 -15.30349 -15.26679 -14.93199 -14.47057 -14.38923 -13.85133 -13.48893 -12.71854 -12.61082 -12.39853 -11.92654 -11.75151 -11.46927 -11.21685 -11.08613 -10.83162 -10.70553 -10.55221 -10.42074 -10.29056 -9.98944 -9.40060 -8.71685 -7.52436 -6.72828 -6.54025 -3.86011 2.16765 2.37533 3.07209 3.07642 3.08888 3.17105 3.87822 3.90464 4.04761 4.42812 5.04085 5.07524 5.45552 5.52675 5.58498 5.63188 5.63730 5.82761 5.85887 6.06455 6.35385 6.47886 6.59070 6.83906 7.06189 7.12318 7.35383 7.57044 7.97056 8.20503 8.58605 9.16619 9.38377 10.42226 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020555 B = 0.007338 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.871323 B = 3814.679545 C = 5156.094535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.315 6.315 3 C 0.174 3.826 4 C -0.295 4.295 5 C 0.224 3.776 6 N -0.533 5.533 7 C -0.303 4.303 8 H 0.103 0.897 9 C 0.024 3.976 10 N -0.879 5.879 11 Si 0.934 3.066 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.270 1.270 15 C -0.006 4.006 16 O -0.320 6.320 17 C 0.036 3.964 18 C -0.110 4.110 19 C -0.162 4.162 20 Cl -0.104 7.104 21 H 0.089 0.911 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.135 0.865 25 H 0.409 0.591 26 H 0.279 0.721 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 -6.444 -0.018 7.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.229 6.229 3 C 0.127 3.873 4 C -0.322 4.322 5 C 0.098 3.902 6 N -0.132 5.132 7 C -0.433 4.433 8 H 0.121 0.879 9 C -0.181 4.181 10 N -0.514 5.514 11 Si 0.760 3.240 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.195 1.195 15 C -0.055 4.055 16 O -0.235 6.235 17 C -0.060 4.060 18 C -0.131 4.131 19 C -0.194 4.194 20 Cl -0.076 7.076 21 H 0.108 0.892 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.152 0.848 25 H 0.245 0.755 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.758 -6.152 -0.017 7.209 hybrid contribution -0.602 0.335 0.005 0.689 sum 3.155 -5.816 -0.012 6.617 Atomic orbital electron populations 1.22933 0.79344 1.02632 1.01598 1.86059 1.20567 1.27193 1.89045 1.18171 0.89782 0.83830 0.95515 1.20021 0.99357 0.89163 1.23698 1.16916 0.86599 0.87842 0.98802 1.41008 1.05454 1.04995 1.61750 1.19725 0.81030 0.94754 1.47751 0.87923 1.25387 1.01398 0.94541 0.96810 1.69708 1.37352 0.97816 1.46535 0.85853 0.81023 0.77881 0.79253 1.19517 1.20496 1.19521 1.17975 0.90093 0.83866 1.13517 1.85980 1.19789 1.26850 1.90839 1.22825 0.80006 1.02658 1.00509 1.20163 0.98494 0.89593 1.04890 1.18808 0.87427 0.86039 1.27117 1.98235 1.73063 1.38187 1.98136 0.89240 0.92820 0.92814 0.84757 0.75486 0.91107 0.93528 0.89293 0.93521 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.32 -5.84 9.95 -19.75 -0.20 -6.04 16 3 C 0.17 3.54 6.68 -39.24 -0.26 3.28 16 4 C -0.30 -6.34 8.29 -39.22 -0.33 -6.67 16 5 C 0.22 5.13 6.63 -83.67 -0.56 4.57 16 6 N -0.53 -13.18 5.43 -9.52 -0.05 -13.24 16 7 C -0.30 -7.57 9.55 -15.14 -0.14 -7.71 16 8 H 0.10 2.42 5.68 -52.49 -0.30 2.12 16 9 C 0.02 0.59 5.50 -17.45 -0.10 0.49 16 10 N -0.88 -22.95 13.05 55.49 0.72 -22.22 16 11 Si 0.93 19.04 29.55 -169.99 -5.02 14.02 16 12 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 13 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 14 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 15 C -0.01 -0.14 6.71 -39.01 -0.26 -0.40 16 16 O -0.32 -6.34 9.74 -19.79 -0.19 -6.53 16 17 C 0.04 0.51 9.81 101.05 0.99 1.50 16 18 C -0.11 -2.12 8.81 -39.45 -0.35 -2.46 16 19 C -0.16 -3.23 6.33 -39.30 -0.25 -3.48 16 20 Cl -0.10 -1.85 28.49 -51.86 -1.48 -3.33 16 21 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.05 0.76 7.66 -51.93 -0.40 0.37 16 23 H 0.05 0.76 7.66 -51.93 -0.40 0.37 16 24 H 0.13 2.78 4.18 -52.49 -0.22 2.56 16 25 H 0.41 10.52 7.24 -40.82 -0.30 10.22 16 26 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.12 2.05 6.29 -52.49 -0.33 1.72 16 LS Contribution 274.28 15.07 4.13 4.13 Total: -1.00 -27.35 274.28 -5.06 -32.41 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -2.71 Total: 10.24 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -0.26 Total: -9.44 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.67 Total: -35.46 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.39 Total: -12.57 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -1.48 Total: -3.33 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.35 -5.06 -32.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020043285.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.493 kcal (2) G-P(sol) polarization free energy of solvation -27.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds