Wall clock time and date at job start Mon Mar 30 2020 06:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36002 * 116.99676 * 2 1 4 4 C 1.38540 * 119.96295 * 359.97438 * 3 2 1 5 5 C 1.38921 * 119.92099 * 179.76691 * 4 3 2 6 6 N 1.39414 * 120.07040 * 180.25195 * 5 4 3 7 7 C 1.36807 * 120.00355 * 0.23153 * 6 5 4 8 8 H 1.08001 * 120.00232 * 0.02562 * 7 6 5 9 9 C 1.38751 * 120.00212 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00066 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99862 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47337 * 60.00254 * 11 9 7 13 13 H 1.48507 * 109.46960 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47371 * 299.99885 * 11 9 7 15 15 C 1.39546 * 119.85382 * 0.48184 * 5 4 3 16 16 O 1.36017 * 120.03758 * 179.78896 * 15 5 4 17 17 C 1.42903 * 117.00154 * 179.72254 * 16 15 5 18 18 C 1.38459 * 119.92669 * 359.51714 * 15 5 4 19 19 C 1.38368 * 120.07660 * 0.25089 * 18 15 5 20 20 Cl 1.73592 * 119.92935 * 179.97438 * 19 18 15 21 21 H 1.09001 * 109.47296 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47660 * 299.99552 * 1 2 3 23 23 H 1.08996 * 109.47726 * 60.00137 * 1 2 3 24 24 H 1.07993 * 120.03881 * 359.97438 * 4 3 2 25 25 H 0.96999 * 119.99888 * 180.23692 * 6 5 4 26 26 H 0.97004 * 120.00284 * 180.02562 * 10 9 7 27 27 H 1.09002 * 109.47382 * 300.00360 * 17 16 15 28 28 H 1.09001 * 109.46938 * 180.02562 * 17 16 15 29 29 H 1.09004 * 109.46926 * 60.00467 * 17 16 15 30 30 H 1.08001 * 119.96227 * 180.22874 * 18 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2910 2.3732 -0.0005 5 6 1.9225 3.6105 0.0044 6 7 1.1654 4.7812 0.0091 7 6 -0.2009 4.7123 0.0138 8 1 -0.6931 3.7509 0.0142 9 6 -0.9544 5.8774 0.0180 10 7 -0.3546 7.0490 0.0170 11 14 -2.8200 5.7831 0.0237 12 1 -3.2753 5.0571 1.2364 13 1 -3.3850 7.1565 0.0270 14 1 -3.2829 5.0610 -1.1886 15 6 3.3163 3.6791 -0.0004 16 8 3.9384 4.8886 0.0001 17 6 5.3675 4.8832 0.0012 18 6 4.0652 2.5145 0.0002 19 6 3.4331 1.2836 0.0002 20 17 4.3758 -0.1740 0.0002 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 0.2125 2.3166 -0.0014 25 1 1.6074 5.6446 0.0091 26 1 -0.8813 7.8635 0.0204 27 1 5.7282 4.3679 0.8915 28 1 5.7347 5.9094 0.0019 29 1 5.7295 4.3679 -0.8885 30 1 5.1439 2.5669 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020043285.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:50 Heat of formation + Delta-G solvation = -70.935964 kcal Electronic energy + Delta-G solvation = -16941.817880 eV Core-core repulsion = 13956.162729 eV Total energy + Delta-G solvation = -2985.655151 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.23188 -39.71883 -37.94851 -37.28985 -35.94418 -33.71662 -30.37695 -30.02771 -28.66467 -27.32953 -26.23794 -22.86992 -22.74600 -19.88378 -19.29515 -18.47951 -17.39185 -16.97565 -16.67898 -16.27139 -16.14112 -15.79302 -15.49593 -15.04196 -14.13158 -14.11828 -13.82079 -13.61889 -13.35677 -12.95943 -12.73013 -12.40303 -12.23636 -12.18356 -12.11403 -12.01336 -11.80826 -11.52905 -10.99560 -10.39243 -9.16106 -8.51799 -8.20720 -5.73200 0.53346 0.73525 1.41705 1.49225 1.52637 1.58641 2.24775 2.48764 2.64868 2.74571 3.25686 3.36558 3.98203 4.32657 4.43962 4.47560 4.50349 4.51648 4.75503 4.77383 4.79280 4.89107 4.96673 5.19466 5.28175 5.43173 5.70404 5.83352 6.48832 6.68923 6.76069 7.42092 7.56353 8.65539 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020555 B = 0.007338 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.871323 B = 3814.679545 C = 5156.094535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.321 6.321 3 C 0.166 3.834 4 C -0.297 4.297 5 C 0.206 3.794 6 N -0.562 5.562 7 C -0.321 4.321 8 H 0.109 0.891 9 C -0.027 4.027 10 N -0.924 5.924 11 Si 0.999 3.001 12 H -0.263 1.263 13 H -0.281 1.281 14 H -0.263 1.263 15 C -0.013 4.013 16 O -0.344 6.344 17 C 0.025 3.975 18 C -0.104 4.104 19 C -0.160 4.160 20 Cl -0.080 7.080 21 H 0.126 0.874 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.137 0.863 25 H 0.398 0.602 26 H 0.277 0.723 27 H 0.060 0.940 28 H 0.112 0.888 29 H 0.061 0.939 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 -8.394 -0.020 9.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.235 6.235 3 C 0.119 3.881 4 C -0.324 4.324 5 C 0.085 3.915 6 N -0.164 5.164 7 C -0.451 4.451 8 H 0.126 0.874 9 C -0.226 4.226 10 N -0.562 5.562 11 Si 0.822 3.178 12 H -0.188 1.188 13 H -0.206 1.206 14 H -0.188 1.188 15 C -0.061 4.061 16 O -0.260 6.260 17 C -0.070 4.070 18 C -0.125 4.125 19 C -0.191 4.191 20 Cl -0.052 7.052 21 H 0.144 0.856 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.154 0.846 25 H 0.232 0.768 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.079 0.921 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.412 -8.178 -0.019 9.292 hybrid contribution -0.515 0.647 0.004 0.828 sum 3.896 -7.530 -0.015 8.479 Atomic orbital electron populations 1.23243 0.77202 1.05125 1.01651 1.86054 1.22737 1.25997 1.88700 1.18273 0.90250 0.84205 0.95344 1.20178 0.99802 0.89269 1.23124 1.17424 0.87841 0.87947 0.98289 1.40946 1.05390 1.04824 1.65254 1.20026 0.81613 0.95220 1.48197 0.87376 1.26253 1.05611 0.94041 0.96725 1.69824 1.38685 0.98333 1.49316 0.84873 0.75735 0.77688 0.79512 1.18769 1.20633 1.18779 1.18135 0.89808 0.85053 1.13134 1.85972 1.22757 1.26442 1.90784 1.23195 0.77179 1.04807 1.01801 1.20464 0.99932 0.88657 1.03406 1.19167 0.87859 0.87316 1.24768 1.98247 1.72269 1.36698 1.97967 0.85578 0.92777 0.92761 0.84570 0.76785 0.91365 0.92105 0.86997 0.92088 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 16 2 O -0.32 -11.18 9.95 -93.57 -0.93 -12.11 16 3 C 0.17 6.52 6.68 22.49 0.15 6.67 16 4 C -0.30 -12.64 8.29 22.51 0.19 -12.46 16 5 C 0.21 9.55 6.63 38.41 0.25 9.80 16 6 N -0.56 -28.78 5.43 -184.03 -1.00 -29.78 16 7 C -0.32 -16.53 9.55 84.04 0.80 -15.72 16 8 H 0.11 5.21 5.68 -2.91 -0.02 5.19 16 9 C -0.03 -1.35 5.50 84.85 0.47 -0.88 16 10 N -0.92 -50.20 13.05 21.64 0.28 -49.91 16 11 Si 1.00 39.67 29.55 68.60 2.03 41.70 16 12 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 13 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 14 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 15 C -0.01 -0.53 6.71 22.64 0.15 -0.38 16 16 O -0.34 -13.49 9.74 -93.74 -0.91 -14.40 16 17 C 0.02 0.65 9.81 113.37 1.11 1.76 16 18 C -0.10 -3.75 8.81 22.35 0.20 -3.56 16 19 C -0.16 -5.99 6.33 22.45 0.14 -5.84 16 20 Cl -0.08 -2.60 28.49 -2.72 -0.08 -2.67 16 21 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 22 H 0.05 1.45 7.66 -2.39 -0.02 1.43 16 23 H 0.05 1.45 7.66 -2.39 -0.02 1.43 16 24 H 0.14 5.64 4.18 -2.91 -0.01 5.63 16 25 H 0.40 21.50 7.24 -92.71 -0.67 20.83 16 26 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 27 H 0.06 1.43 7.66 -2.39 -0.02 1.41 16 28 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.06 1.43 7.66 -2.38 -0.02 1.41 16 30 H 0.15 4.55 6.29 -2.91 -0.02 4.53 16 Total: -1.00 -59.39 274.28 4.49 -54.91 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.52 Total: 31.17 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 4.58 Total: -18.90 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -0.72 Total: -79.69 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -1.84 Total: -26.51 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.08 Total: -2.67 kcal Total: -59.39 4.49 -54.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020043285.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.030 kcal (2) G-P(sol) polarization free energy of solvation -59.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds