Wall clock time and date at job start Mon Mar 30 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29360 * 1 3 3 Si 1.86810 * 119.99515 * 2 1 4 4 H 1.48498 * 109.46947 * 269.99921 * 3 2 1 5 5 H 1.48505 * 109.46939 * 29.99692 * 3 2 1 6 6 H 1.48501 * 109.47077 * 149.99779 * 3 2 1 7 7 C 1.46628 * 120.00683 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99664 * 0.02562 * 7 2 1 9 9 O 1.22311 * 120.00215 * 180.02562 * 7 2 1 10 10 C 1.35727 * 117.00121 * 185.10160 * 9 7 2 11 11 C 1.38926 * 120.06876 * 354.27073 * 10 9 7 12 12 C 1.38062 * 119.92600 * 179.97438 * 11 10 9 13 13 C 1.38335 * 120.07568 * 359.97333 * 12 11 10 14 14 N 1.48009 * 119.92841 * 180.02562 * 13 12 11 15 15 O 1.31694 * 120.00584 * 0.02562 * 14 13 12 16 16 O 1.31706 * 119.99892 * 180.02562 * 14 13 12 17 17 C 1.38281 * 120.13899 * 359.77520 * 13 12 11 18 18 C 1.38121 * 120.07255 * 0.50377 * 17 13 12 19 19 C 1.50697 * 120.03544 * 179.74848 * 18 17 13 20 20 Cl 1.80300 * 109.46888 * 269.72425 * 19 18 17 21 21 H 0.96993 * 120.00684 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.03860 * 359.97438 * 11 10 9 23 23 H 1.08006 * 119.96566 * 180.02562 * 12 11 10 24 24 H 1.08000 * 119.96727 * 180.25446 * 17 13 12 25 25 H 1.09004 * 109.47066 * 149.72602 * 19 18 17 26 26 H 1.08995 * 109.47432 * 29.72522 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2936 0.0000 0.0000 3 14 2.2275 1.6179 0.0000 4 1 2.4750 2.0465 -1.4001 5 1 1.4248 2.6528 0.7000 6 1 3.5251 1.4404 0.7001 7 6 2.0269 -1.2698 0.0006 8 1 1.4870 -2.2051 0.0006 9 8 3.2500 -1.2697 0.0010 10 6 3.8664 -2.4742 -0.1060 11 6 3.1166 -3.6436 -0.0899 12 6 3.7465 -4.8672 -0.1995 13 6 5.1227 -4.9296 -0.3258 14 7 5.7946 -6.2431 -0.4436 15 8 5.0825 -7.3509 -0.4287 16 8 7.1048 -6.3042 -0.5634 17 6 5.8714 -3.7672 -0.3474 18 6 5.2478 -2.5401 -0.2323 19 6 6.0651 -1.2742 -0.2502 20 17 6.5422 -0.8430 1.4342 21 1 -0.4851 0.8399 -0.0004 22 1 2.0421 -3.5956 0.0082 23 1 3.1642 -5.7768 -0.1875 24 1 6.9452 -3.8190 -0.4502 25 1 5.4728 -0.4654 -0.6784 26 1 6.9599 -1.4278 -0.8533 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035415045.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:06 Heat of formation + Delta-G solvation = 25.719461 kcal Electronic energy + Delta-G solvation = -16412.217656 eV Core-core repulsion = 13294.920705 eV Total energy + Delta-G solvation = -3117.296952 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.47085 -38.59948 -36.87201 -35.52803 -34.01288 -33.24006 -32.06718 -30.28806 -26.96574 -26.39227 -24.75222 -22.06464 -20.94331 -19.34813 -18.22643 -17.23505 -16.88247 -15.70610 -15.67133 -15.14439 -14.77407 -14.34267 -13.95604 -13.86199 -13.37863 -13.03883 -12.90577 -12.36710 -11.88013 -11.46794 -11.43853 -10.95736 -10.52452 -10.19895 -10.08911 -10.00989 -9.97029 -9.93960 -9.71148 -8.65990 -8.21558 -7.87063 -4.55053 0.21520 1.60363 1.95035 2.43242 2.53766 2.55607 2.67122 2.84133 3.25830 3.64153 3.76065 4.26860 4.92402 5.07128 5.36813 5.55486 5.61397 5.73741 5.90163 6.18378 6.28102 6.46880 6.60133 6.72396 6.78492 6.95397 7.22173 7.39804 8.01685 8.63697 9.07228 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.007134 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.174016 B = 3924.191131 C = 4962.392446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.066 3.934 3 Si 0.912 3.088 4 H -0.253 1.253 5 H -0.262 1.262 6 H -0.236 1.236 7 C -0.326 4.326 8 H 0.122 0.878 9 O -0.068 6.068 10 C 0.075 3.925 11 C -0.218 4.218 12 C -0.004 4.004 13 C -0.123 4.123 14 N 0.037 4.963 15 O -0.286 6.286 16 O -0.287 6.287 17 C 0.009 3.991 18 C -0.171 4.171 19 C 0.033 3.967 20 Cl -0.197 7.197 21 H 0.315 0.685 22 H 0.142 0.858 23 H 0.133 0.867 24 H 0.137 0.863 25 H 0.098 0.902 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.424 7.040 -0.650 7.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.160 4.160 3 Si 0.731 3.269 4 H -0.177 1.177 5 H -0.186 1.186 6 H -0.158 1.158 7 C -0.405 4.405 8 H 0.139 0.861 9 O 0.046 5.954 10 C 0.013 3.987 11 C -0.238 4.238 12 C -0.024 4.024 13 C -0.221 4.221 14 N 0.470 4.530 15 O -0.450 6.450 16 O -0.451 6.451 17 C -0.011 4.011 18 C -0.175 4.175 19 C -0.030 4.030 20 Cl -0.171 7.171 21 H 0.128 0.872 22 H 0.159 0.841 23 H 0.151 0.849 24 H 0.155 0.845 25 H 0.117 0.883 26 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.112 7.777 -0.470 7.870 hybrid contribution 0.017 0.062 0.110 0.128 sum 1.129 7.839 -0.359 7.928 Atomic orbital electron populations 1.68504 1.08281 1.33209 1.26802 1.26834 0.95238 1.00161 0.93808 0.86018 0.81679 0.77978 0.81194 1.17695 1.18609 1.15842 1.21343 0.80866 0.97373 1.40881 0.86093 1.79831 1.22631 1.31139 1.61839 1.18603 0.91051 0.82715 1.06351 1.20550 1.00434 0.90308 1.12557 1.20391 0.91324 0.98237 0.92440 1.19414 0.92403 0.80099 1.30221 1.49974 1.02203 1.03864 0.96943 1.96138 1.64029 1.21904 1.62907 1.96135 0.90716 1.96138 1.62080 1.20135 0.99593 0.88892 0.92520 1.18169 0.90258 0.93271 1.15762 1.22816 1.00151 0.96520 0.83479 1.98713 1.93365 1.94408 1.30597 0.87179 0.84065 0.84877 0.84501 0.88317 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -14.48 13.88 55.99 0.78 -13.70 15 2 C 0.07 1.25 5.69 -15.21 -0.09 1.16 15 3 Si 0.91 14.46 28.83 -169.99 -4.90 9.56 15 4 H -0.25 -3.92 7.11 56.52 0.40 -3.52 15 5 H -0.26 -3.98 7.11 56.52 0.40 -3.58 15 6 H -0.24 -3.87 7.11 56.52 0.40 -3.47 15 7 C -0.33 -6.49 9.98 34.12 0.34 -6.15 15 8 H 0.12 2.47 5.14 -52.49 -0.27 2.20 15 9 O -0.07 -1.32 7.28 20.98 0.15 -1.17 15 10 C 0.07 1.41 6.56 -39.09 -0.26 1.16 15 11 C -0.22 -4.08 9.12 -39.39 -0.36 -4.44 15 12 C 0.00 -0.07 9.57 -39.61 -0.38 -0.45 15 13 C -0.12 -2.55 6.89 -79.90 -0.55 -3.10 15 14 N 0.04 0.87 4.98 33.99 0.17 1.04 15 15 O -0.29 -6.93 19.15 -31.56 -0.60 -7.53 15 16 O -0.29 -6.89 19.15 -31.57 -0.60 -7.50 15 17 C 0.01 0.17 9.22 -39.61 -0.37 -0.20 15 18 C -0.17 -3.02 5.27 -104.43 -0.55 -3.57 15 19 C 0.03 0.49 6.57 36.00 0.24 0.72 15 20 Cl -0.20 -3.17 29.13 -51.86 -1.51 -4.68 15 21 H 0.31 5.31 8.26 -40.82 -0.34 4.98 15 22 H 0.14 2.52 5.69 -52.48 -0.30 2.22 15 23 H 0.13 2.42 7.57 -52.48 -0.40 2.02 15 24 H 0.14 2.39 7.57 -52.49 -0.40 1.99 15 25 H 0.10 1.40 7.54 -51.93 -0.39 1.01 15 26 H 0.10 1.19 8.08 -51.93 -0.42 0.77 15 LS Contribution 262.46 15.07 3.96 3.96 Total: -1.00 -24.43 262.46 -5.84 -30.28 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -1.31 Total: 4.62 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -1.97 Total: -14.87 kcal Atomic # 7 Polarization: -13.61 SS G_CDS: 0.95 Total: -12.66 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -1.06 Total: -16.20 kcal Atomic # 14 Polarization: 14.46 SS G_CDS: -4.90 Total: 9.56 kcal Atomic # 17 Polarization: -3.17 SS G_CDS: -1.51 Total: -4.68 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -24.43 -5.84 -30.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035415045.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.996 kcal (2) G-P(sol) polarization free energy of solvation -24.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds