Wall clock time and date at job start Mon Mar 30 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29360 * 1 3 3 Si 1.86810 * 119.99515 * 2 1 4 4 H 1.48498 * 109.46947 * 269.99921 * 3 2 1 5 5 H 1.48505 * 109.46939 * 29.99692 * 3 2 1 6 6 H 1.48501 * 109.47077 * 149.99779 * 3 2 1 7 7 C 1.46628 * 120.00683 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99664 * 0.02562 * 7 2 1 9 9 O 1.22311 * 120.00215 * 180.02562 * 7 2 1 10 10 C 1.35727 * 117.00121 * 185.10160 * 9 7 2 11 11 C 1.38926 * 120.06876 * 354.27073 * 10 9 7 12 12 C 1.38062 * 119.92600 * 179.97438 * 11 10 9 13 13 C 1.38335 * 120.07568 * 359.97333 * 12 11 10 14 14 N 1.48009 * 119.92841 * 180.02562 * 13 12 11 15 15 O 1.31694 * 120.00584 * 0.02562 * 14 13 12 16 16 O 1.31706 * 119.99892 * 180.02562 * 14 13 12 17 17 C 1.38281 * 120.13899 * 359.77520 * 13 12 11 18 18 C 1.38121 * 120.07255 * 0.50377 * 17 13 12 19 19 C 1.50697 * 120.03544 * 179.74848 * 18 17 13 20 20 Cl 1.80300 * 109.46888 * 269.72425 * 19 18 17 21 21 H 0.96993 * 120.00684 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.03860 * 359.97438 * 11 10 9 23 23 H 1.08006 * 119.96566 * 180.02562 * 12 11 10 24 24 H 1.08000 * 119.96727 * 180.25446 * 17 13 12 25 25 H 1.09004 * 109.47066 * 149.72602 * 19 18 17 26 26 H 1.08995 * 109.47432 * 29.72522 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2936 0.0000 0.0000 3 14 2.2275 1.6179 0.0000 4 1 2.4750 2.0465 -1.4001 5 1 1.4248 2.6528 0.7000 6 1 3.5251 1.4404 0.7001 7 6 2.0269 -1.2698 0.0006 8 1 1.4870 -2.2051 0.0006 9 8 3.2500 -1.2697 0.0010 10 6 3.8664 -2.4742 -0.1060 11 6 3.1166 -3.6436 -0.0899 12 6 3.7465 -4.8672 -0.1995 13 6 5.1227 -4.9296 -0.3258 14 7 5.7946 -6.2431 -0.4436 15 8 5.0825 -7.3509 -0.4287 16 8 7.1048 -6.3042 -0.5634 17 6 5.8714 -3.7672 -0.3474 18 6 5.2478 -2.5401 -0.2323 19 6 6.0651 -1.2742 -0.2502 20 17 6.5422 -0.8430 1.4342 21 1 -0.4851 0.8399 -0.0004 22 1 2.0421 -3.5956 0.0082 23 1 3.1642 -5.7768 -0.1875 24 1 6.9452 -3.8190 -0.4502 25 1 5.4728 -0.4654 -0.6784 26 1 6.9599 -1.4278 -0.8533 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035415045.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:05 Heat of formation + Delta-G solvation = 13.817333 kcal Electronic energy + Delta-G solvation = -16412.733771 eV Core-core repulsion = 13294.920705 eV Total energy + Delta-G solvation = -3117.813067 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.51189 -39.90565 -38.05982 -36.77872 -36.03076 -34.38226 -33.39357 -31.70557 -28.76906 -27.62785 -26.28034 -23.63709 -22.39544 -21.07913 -19.87449 -18.52700 -18.16285 -17.57346 -17.31128 -16.82362 -16.01382 -15.78150 -15.48558 -15.14446 -14.72423 -14.40533 -14.24739 -13.72859 -13.31458 -13.08712 -12.78596 -12.22248 -12.05861 -11.59964 -11.43344 -11.35294 -11.27634 -11.19146 -11.19025 -10.06083 -9.77367 -9.71231 -6.16662 -1.53732 0.28075 0.49771 1.10188 1.26313 1.35788 1.44288 1.60667 1.80256 1.94949 2.04653 2.79049 3.60146 3.75847 4.03606 4.11603 4.30049 4.32103 4.45584 4.67460 4.77074 4.94864 5.04093 5.21532 5.31383 5.44546 5.66921 6.09128 6.61926 6.85745 7.13404 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.007134 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.174016 B = 3924.191131 C = 4962.392446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.682 5.682 2 C 0.030 3.970 3 Si 0.963 3.037 4 H -0.236 1.236 5 H -0.237 1.237 6 H -0.239 1.239 7 C -0.178 4.178 8 H 0.140 0.860 9 O -0.026 6.026 10 C -0.037 4.037 11 C -0.167 4.167 12 C -0.056 4.056 13 C -0.093 4.093 14 N 0.034 4.966 15 O -0.449 6.449 16 O -0.445 6.445 17 C -0.044 4.044 18 C -0.108 4.108 19 C 0.027 3.973 20 Cl -0.200 7.200 21 H 0.349 0.651 22 H 0.158 0.842 23 H 0.123 0.877 24 H 0.130 0.870 25 H 0.121 0.879 26 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 18.394 -0.026 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.204 4.204 3 Si 0.777 3.223 4 H -0.159 1.159 5 H -0.160 1.160 6 H -0.161 1.161 7 C -0.265 4.265 8 H 0.157 0.843 9 O 0.097 5.903 10 C -0.096 4.096 11 C -0.189 4.189 12 C -0.077 4.077 13 C -0.208 4.208 14 N 0.402 4.598 15 O -0.568 6.568 16 O -0.564 6.564 17 C -0.065 4.065 18 C -0.113 4.113 19 C -0.035 4.035 20 Cl -0.174 7.174 21 H 0.166 0.834 22 H 0.176 0.824 23 H 0.141 0.859 24 H 0.148 0.852 25 H 0.139 0.861 26 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.696 18.560 0.106 19.415 hybrid contribution 0.097 -0.783 0.157 0.804 sum -5.600 17.778 0.263 18.641 Atomic orbital electron populations 1.68414 1.09247 1.37376 1.15572 1.27910 0.96230 1.02248 0.93965 0.85268 0.80622 0.73820 0.82595 1.15944 1.15991 1.16118 1.23038 0.81758 0.99781 1.21966 0.84317 1.79869 1.22329 1.33484 1.54623 1.18286 0.91381 0.81006 1.18926 1.20548 1.00490 0.89593 1.08236 1.20247 0.91037 0.98518 0.97863 1.19836 0.93290 0.80163 1.27497 1.49588 1.01241 1.03586 1.05422 1.95954 1.64228 1.23857 1.72712 1.95952 0.92477 1.96348 1.71634 1.20042 0.99378 0.89004 0.98027 1.18327 0.90014 0.93466 1.09477 1.23111 1.01541 0.95468 0.83372 1.98718 1.93429 1.94193 1.31063 0.83362 0.82448 0.85857 0.85218 0.86107 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -16.73 13.88 23.22 0.32 -16.41 15 2 C 0.03 0.72 5.69 87.25 0.50 1.22 15 3 Si 0.96 17.86 28.83 68.60 1.98 19.84 15 4 H -0.24 -4.24 7.11 99.48 0.71 -3.53 15 5 H -0.24 -3.93 7.11 99.48 0.71 -3.23 15 6 H -0.24 -4.94 7.11 99.48 0.71 -4.23 15 7 C -0.18 -4.87 9.98 70.01 0.70 -4.17 15 8 H 0.14 3.89 5.14 -2.91 -0.01 3.87 15 9 O -0.03 -0.74 7.28 52.15 0.38 -0.36 15 10 C -0.04 -1.23 6.56 22.59 0.15 -1.08 15 11 C -0.17 -5.86 9.12 22.39 0.20 -5.66 15 12 C -0.06 -2.42 9.57 22.25 0.21 -2.21 15 13 C -0.09 -4.60 6.89 36.41 0.25 -4.34 15 14 N 0.03 2.06 4.98 -46.39 -0.23 1.83 15 15 O -0.45 -28.59 19.15 3.52 0.07 -28.53 15 16 O -0.44 -28.09 19.15 3.51 0.07 -28.02 15 17 C -0.04 -1.84 9.22 22.25 0.21 -1.64 15 18 C -0.11 -3.68 5.27 -19.74 -0.10 -3.78 15 19 C 0.03 0.70 6.57 71.23 0.47 1.17 15 20 Cl -0.20 -5.80 29.13 -2.72 -0.08 -5.88 15 21 H 0.35 6.65 8.26 -92.71 -0.77 5.89 15 22 H 0.16 4.64 5.69 -2.91 -0.02 4.62 15 23 H 0.12 5.34 7.57 -2.91 -0.02 5.32 15 24 H 0.13 5.44 7.57 -2.91 -0.02 5.42 15 25 H 0.12 2.59 7.54 -2.38 -0.02 2.57 15 26 H 0.12 2.69 8.08 -2.39 -0.02 2.67 15 Total: -1.00 -64.97 262.46 6.33 -58.65 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.24 Total: 19.38 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 2.58 Total: -20.50 kcal Atomic # 7 Polarization: -14.67 SS G_CDS: 0.09 Total: -14.58 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: 0.51 Total: -56.91 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: 1.98 Total: 19.84 kcal Atomic # 17 Polarization: -5.80 SS G_CDS: -0.08 Total: -5.88 kcal Total: -64.97 6.33 -58.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035415045.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.463 kcal (2) G-P(sol) polarization free energy of solvation -64.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds