Wall clock time and date at job start Mon Mar 30 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86808 * 119.99908 * 2 1 4 4 H 1.48497 * 109.46690 * 240.00104 * 3 2 1 5 5 H 1.48498 * 109.46941 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47175 * 120.00025 * 3 2 1 7 7 C 1.40460 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.41025 * 119.99555 * 0.02562 * 7 2 1 10 10 O 1.21439 * 120.00155 * 359.97438 * 9 7 2 11 11 C 1.50701 * 119.99767 * 180.02562 * 9 7 2 12 12 O 1.42903 * 109.46878 * 179.97438 * 11 9 7 13 13 C 1.35847 * 116.99658 * 179.97438 * 12 11 9 14 14 C 1.36595 * 120.18231 * 359.72124 * 13 12 11 15 15 C 1.39201 * 121.00297 * 179.81417 * 14 13 12 16 16 C 1.36201 * 120.93989 * 0.44466 * 15 14 13 17 17 C 1.40418 * 119.72956 * 359.79867 * 16 15 14 18 18 C 1.40782 * 121.37345 * 179.97438 * 17 16 15 19 19 C 1.36565 * 118.14940 * 180.02562 * 18 17 16 20 20 C 1.39344 * 119.92981 * 0.02562 * 19 18 17 21 21 N 1.31075 * 121.73315 * 0.02562 * 20 19 18 22 22 C 1.33599 * 121.33482 * 359.95711 * 21 20 19 23 23 H 0.97001 * 119.99674 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99762 * 11 9 7 25 25 H 1.09001 * 109.47380 * 59.99849 * 11 9 7 26 26 H 1.08003 * 119.50300 * 359.97438 * 14 13 12 27 27 H 1.07997 * 119.53343 * 180.22456 * 15 14 13 28 28 H 1.08005 * 120.13958 * 179.81509 * 16 15 14 29 29 H 1.07999 * 120.92613 * 359.97438 * 18 17 16 30 30 H 1.08006 * 120.03701 * 179.97438 * 19 18 17 31 31 H 1.08000 * 119.13276 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.0929 1.6964 -1.2125 5 1 1.2742 2.7465 -0.0006 6 1 3.0929 1.6965 1.2124 7 6 2.0076 -1.2164 0.0005 8 1 3.0875 -1.2164 0.0010 9 6 1.3024 -2.4377 0.0005 10 8 0.0881 -2.4377 0.0005 11 6 2.0560 -3.7428 0.0017 12 8 1.1273 -4.8289 0.0021 13 6 1.6466 -6.0842 0.0026 14 6 3.0002 -6.2675 -0.0030 15 6 3.5507 -7.5460 0.0013 16 6 2.7547 -8.6511 0.0021 17 6 1.3583 -8.5035 0.0029 18 6 0.5030 -9.6218 0.0033 19 6 -0.8448 -9.4020 0.0035 20 6 -1.3367 -8.0983 0.0028 21 7 -0.5370 -7.0598 0.0015 22 6 0.7910 -7.2055 0.0015 23 1 -0.4850 0.8401 -0.0004 24 1 2.6833 -3.8009 -0.8878 25 1 2.6820 -3.8001 0.8922 26 1 3.6534 -5.4073 -0.0083 27 1 4.6243 -7.6633 0.0003 28 1 3.1956 -9.6371 0.0024 29 1 0.9018 -10.6255 0.0025 30 1 -1.5288 -10.2379 0.0033 31 1 -2.4049 -7.9394 0.0026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041246853.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:11 Heat of formation + Delta-G solvation = -22.301028 kcal Electronic energy + Delta-G solvation = -17729.440425 eV Core-core repulsion = 14748.327092 eV Total energy + Delta-G solvation = -2981.113332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78809 -38.61876 -36.67003 -35.89333 -32.92388 -32.61088 -30.50273 -29.28412 -28.29707 -25.85691 -24.02237 -23.42031 -21.60081 -19.86707 -17.98950 -17.74588 -16.83041 -16.22318 -15.63784 -15.39545 -15.32105 -14.54091 -14.29136 -13.95544 -13.59584 -13.34237 -12.97301 -12.87849 -12.13788 -11.94840 -11.74818 -11.43163 -11.41566 -11.09175 -10.88092 -10.46207 -10.43300 -10.27325 -9.73344 -9.27381 -8.96270 -8.71678 -7.49778 -7.45013 -6.31130 -4.98963 0.64755 0.90237 2.18499 3.04736 3.10097 3.10740 3.12883 3.65578 4.01842 4.16142 4.27254 4.42259 4.75154 4.92475 4.98642 5.02794 5.25554 5.30921 5.33026 5.43166 5.69314 5.87216 5.98514 6.06597 6.14071 6.30341 6.32380 6.43793 6.57066 6.61867 6.90953 7.18983 7.81002 7.95930 8.20693 8.74934 8.75600 10.28383 10.49387 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.038057 B = 0.004599 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.556586 B = 6087.263867 C = 6807.675976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.082 3.918 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.365 3.635 10 O -0.516 6.516 11 C 0.011 3.989 12 O -0.261 6.261 13 C 0.179 3.821 14 C -0.236 4.236 15 C -0.059 4.059 16 C -0.165 4.165 17 C -0.064 4.064 18 C -0.078 4.078 19 C -0.163 4.163 20 C 0.104 3.896 21 N -0.433 5.433 22 C 0.101 3.899 23 H 0.276 0.724 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.136 0.864 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.019 -15.706 0.004 16.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.090 0.910 9 C 0.257 3.743 10 O -0.402 6.402 11 C -0.065 4.065 12 O -0.170 6.170 13 C 0.129 3.871 14 C -0.257 4.257 15 C -0.077 4.077 16 C -0.184 4.184 17 C -0.066 4.066 18 C -0.104 4.104 19 C -0.183 4.183 20 C -0.069 4.069 21 N -0.140 5.140 22 C -0.022 4.022 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.154 0.846 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.773 -14.640 0.002 15.119 hybrid contribution 1.294 -0.139 0.001 1.301 sum 5.067 -14.780 0.003 15.624 Atomic orbital electron populations 1.69947 1.07539 1.28369 1.30647 1.25971 0.94651 1.00930 0.92576 0.86349 0.79969 0.80288 0.79818 1.18905 1.20211 1.18899 1.20488 0.94829 0.91023 1.50147 0.90969 1.19391 0.89501 0.85669 0.79764 1.90478 1.15000 1.87697 1.47050 1.23941 0.93948 0.88140 1.00493 1.86462 1.35573 1.10390 1.84608 1.18899 0.90929 0.85756 0.91492 1.20951 0.93776 0.99071 1.11875 1.20614 0.99790 0.91605 0.95701 1.20670 0.91536 0.98991 1.07165 1.18593 0.94928 0.92811 1.00280 1.21328 0.93308 0.98061 0.97696 1.21919 0.96231 0.98773 1.01346 1.22965 1.00165 0.87789 0.95993 1.68087 1.03280 1.33982 1.08636 1.18250 0.89994 0.90305 1.03633 0.91282 0.91584 0.91587 0.84600 0.85696 0.85640 0.84537 0.84764 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.53 11.72 55.57 0.65 -20.88 16 2 C 0.08 2.23 5.50 -17.27 -0.10 2.14 16 3 Si 0.91 19.24 29.56 -169.99 -5.03 14.22 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.53 -14.70 9.22 -37.69 -0.35 -15.05 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.37 10.54 6.98 -33.25 -0.23 10.31 16 10 O -0.52 -17.24 15.02 -14.48 -0.22 -17.46 16 11 C 0.01 0.25 5.09 36.01 0.18 0.43 16 12 O -0.26 -6.38 9.47 -39.15 -0.37 -6.75 16 13 C 0.18 3.62 6.71 -39.11 -0.26 3.36 16 14 C -0.24 -3.86 8.98 -39.82 -0.36 -4.22 16 15 C -0.06 -0.78 9.95 -39.96 -0.40 -1.17 16 16 C -0.16 -2.10 9.77 -39.49 -0.39 -2.48 16 17 C -0.06 -0.96 5.74 -106.81 -0.61 -1.57 16 18 C -0.08 -0.91 9.90 -39.22 -0.39 -1.30 16 19 C -0.16 -1.85 10.03 -39.77 -0.40 -2.25 16 20 C 0.10 1.51 11.15 -17.46 -0.19 1.32 16 21 N -0.43 -8.54 10.13 -10.88 -0.11 -8.65 16 22 C 0.10 1.93 6.62 -84.73 -0.56 1.36 16 23 H 0.28 7.22 8.29 -40.82 -0.34 6.88 16 24 H 0.07 1.36 7.64 -51.93 -0.40 0.96 16 25 H 0.07 1.36 7.67 -51.93 -0.40 0.96 16 26 H 0.14 2.05 6.20 -52.48 -0.33 1.72 16 27 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 29 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 280.79 15.07 4.23 4.23 Total: -1.00 -35.94 280.79 -7.67 -43.61 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -2.78 Total: 0.80 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -4.05 Total: -9.13 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 0.54 Total: -29.53 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.59 Total: -24.21 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.94 -7.67 -43.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041246853.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.313 kcal (2) G-P(sol) polarization free energy of solvation -35.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds