Wall clock time and date at job start Mon Mar 30 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86808 * 119.99908 * 2 1 4 4 H 1.48497 * 109.46690 * 240.00104 * 3 2 1 5 5 H 1.48498 * 109.46941 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47175 * 120.00025 * 3 2 1 7 7 C 1.40460 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.41025 * 119.99555 * 0.02562 * 7 2 1 10 10 O 1.21439 * 120.00155 * 359.97438 * 9 7 2 11 11 C 1.50701 * 119.99767 * 180.02562 * 9 7 2 12 12 O 1.42903 * 109.46878 * 179.97438 * 11 9 7 13 13 C 1.35847 * 116.99658 * 179.97438 * 12 11 9 14 14 C 1.36595 * 120.18231 * 359.72124 * 13 12 11 15 15 C 1.39201 * 121.00297 * 179.81417 * 14 13 12 16 16 C 1.36201 * 120.93989 * 0.44466 * 15 14 13 17 17 C 1.40418 * 119.72956 * 359.79867 * 16 15 14 18 18 C 1.40782 * 121.37345 * 179.97438 * 17 16 15 19 19 C 1.36565 * 118.14940 * 180.02562 * 18 17 16 20 20 C 1.39344 * 119.92981 * 0.02562 * 19 18 17 21 21 N 1.31075 * 121.73315 * 0.02562 * 20 19 18 22 22 C 1.33599 * 121.33482 * 359.95711 * 21 20 19 23 23 H 0.97001 * 119.99674 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99762 * 11 9 7 25 25 H 1.09001 * 109.47380 * 59.99849 * 11 9 7 26 26 H 1.08003 * 119.50300 * 359.97438 * 14 13 12 27 27 H 1.07997 * 119.53343 * 180.22456 * 15 14 13 28 28 H 1.08005 * 120.13958 * 179.81509 * 16 15 14 29 29 H 1.07999 * 120.92613 * 359.97438 * 18 17 16 30 30 H 1.08006 * 120.03701 * 179.97438 * 19 18 17 31 31 H 1.08000 * 119.13276 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.0929 1.6964 -1.2125 5 1 1.2742 2.7465 -0.0006 6 1 3.0929 1.6965 1.2124 7 6 2.0076 -1.2164 0.0005 8 1 3.0875 -1.2164 0.0010 9 6 1.3024 -2.4377 0.0005 10 8 0.0881 -2.4377 0.0005 11 6 2.0560 -3.7428 0.0017 12 8 1.1273 -4.8289 0.0021 13 6 1.6466 -6.0842 0.0026 14 6 3.0002 -6.2675 -0.0030 15 6 3.5507 -7.5460 0.0013 16 6 2.7547 -8.6511 0.0021 17 6 1.3583 -8.5035 0.0029 18 6 0.5030 -9.6218 0.0033 19 6 -0.8448 -9.4020 0.0035 20 6 -1.3367 -8.0983 0.0028 21 7 -0.5370 -7.0598 0.0015 22 6 0.7910 -7.2055 0.0015 23 1 -0.4850 0.8401 -0.0004 24 1 2.6833 -3.8009 -0.8878 25 1 2.6820 -3.8001 0.8922 26 1 3.6534 -5.4073 -0.0083 27 1 4.6243 -7.6633 0.0003 28 1 3.1956 -9.6371 0.0024 29 1 0.9018 -10.6255 0.0025 30 1 -1.5288 -10.2379 0.0033 31 1 -2.4049 -7.9394 0.0026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041246853.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:10 Heat of formation + Delta-G solvation = -47.280795 kcal Electronic energy + Delta-G solvation = -17730.523629 eV Core-core repulsion = 14748.327092 eV Total energy + Delta-G solvation = -2982.196536 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.96187 -40.14507 -38.53630 -37.30099 -34.82408 -33.97561 -31.64455 -30.78720 -29.99206 -27.74435 -25.14465 -24.57734 -22.88716 -21.74116 -19.26247 -19.09631 -18.30700 -17.91303 -17.13614 -17.01902 -16.88747 -15.88955 -15.46998 -15.29367 -15.11816 -14.78563 -14.51444 -14.03379 -13.89151 -13.36281 -13.30471 -12.87558 -12.87190 -12.59099 -12.47987 -12.10983 -12.05641 -11.97008 -11.03816 -10.98277 -10.39209 -9.81640 -9.64099 -8.74423 -8.38427 -7.21154 -0.43003 -0.19587 1.07150 1.36956 1.37309 1.54618 2.02264 2.10143 2.12557 2.32239 3.12911 3.25062 3.33507 3.79866 3.82880 3.98344 4.02503 4.09313 4.25738 4.34560 4.42504 4.48269 4.49703 4.68440 4.91541 5.08586 5.10008 5.12749 5.31797 5.46372 5.60817 5.85736 5.87143 6.35350 6.61189 6.70992 7.07949 8.17291 8.43588 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.038057 B = 0.004599 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.556586 B = 6087.263867 C = 6807.675976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.022 3.978 3 Si 1.007 2.993 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.555 4.555 8 H 0.100 0.900 9 C 0.333 3.667 10 O -0.583 6.583 11 C 0.027 3.973 12 O -0.311 6.311 13 C 0.115 3.885 14 C -0.222 4.222 15 C -0.071 4.071 16 C -0.136 4.136 17 C -0.084 4.084 18 C -0.062 4.062 19 C -0.158 4.158 20 C 0.099 3.901 21 N -0.511 5.511 22 C 0.067 3.933 23 H 0.284 0.716 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.167 0.833 28 H 0.175 0.825 29 H 0.188 0.812 30 H 0.182 0.818 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.843 -18.245 0.004 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.197 4.197 3 Si 0.824 3.176 4 H -0.172 1.172 5 H -0.195 1.195 6 H -0.172 1.172 7 C -0.585 4.585 8 H 0.118 0.882 9 C 0.230 3.770 10 O -0.475 6.475 11 C -0.049 4.049 12 O -0.223 6.223 13 C 0.068 3.932 14 C -0.242 4.242 15 C -0.089 4.089 16 C -0.154 4.154 17 C -0.086 4.086 18 C -0.088 4.088 19 C -0.177 4.177 20 C -0.073 4.073 21 N -0.220 5.220 22 C -0.055 4.055 23 H 0.094 0.906 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.159 0.841 27 H 0.185 0.815 28 H 0.193 0.807 29 H 0.205 0.795 30 H 0.200 0.800 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.641 -17.225 0.002 18.461 hybrid contribution 0.362 0.404 0.001 0.543 sum 7.003 -16.821 0.003 18.220 Atomic orbital electron populations 1.70123 1.10286 1.30225 1.31344 1.27405 0.95517 1.05891 0.90901 0.84947 0.78301 0.73527 0.80846 1.17213 1.19475 1.17203 1.21129 0.96375 0.91516 1.49496 0.88151 1.20301 0.89201 0.88722 0.78797 1.90420 1.17568 1.89263 1.50199 1.23463 0.93001 0.86266 1.02125 1.86351 1.36797 1.12254 1.86929 1.19388 0.93031 0.84389 0.96421 1.21242 0.92244 1.01202 1.09528 1.21053 1.02024 0.90110 0.95726 1.21285 0.90336 1.01029 1.02798 1.19031 0.96773 0.92059 1.00777 1.21942 0.92965 0.99071 0.94814 1.22343 0.97315 0.98304 0.99747 1.23540 1.00744 0.88825 0.94216 1.67999 1.04657 1.36971 1.12335 1.18619 0.90053 0.91776 1.05004 0.90557 0.89714 0.89729 0.84099 0.81514 0.80727 0.79464 0.80040 0.80942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.52 11.72 21.91 0.26 -48.27 16 2 C 0.02 1.21 5.50 85.43 0.47 1.68 16 3 Si 1.01 39.46 29.56 68.60 2.03 41.49 16 4 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 5 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 6 H -0.25 -9.05 7.11 99.48 0.71 -8.35 16 7 C -0.55 -31.54 9.22 23.50 0.22 -31.32 16 8 H 0.10 4.93 7.85 -2.91 -0.02 4.91 16 9 C 0.33 20.50 6.98 26.37 0.18 20.68 16 10 O -0.58 -42.22 15.02 15.50 0.23 -41.98 16 11 C 0.03 1.33 5.09 71.24 0.36 1.70 16 12 O -0.31 -16.61 9.47 -72.81 -0.69 -17.30 16 13 C 0.11 4.94 6.71 22.57 0.15 5.09 16 14 C -0.22 -7.26 8.98 22.12 0.20 -7.06 16 15 C -0.07 -1.66 9.95 22.03 0.22 -1.44 16 16 C -0.14 -2.89 9.77 22.33 0.22 -2.67 16 17 C -0.08 -2.35 5.74 -21.28 -0.12 -2.47 16 18 C -0.06 -1.20 9.90 22.50 0.22 -0.98 16 19 C -0.16 -3.11 10.03 22.14 0.22 -2.88 16 20 C 0.10 2.93 11.15 85.07 0.95 3.88 16 21 N -0.51 -21.57 10.13 -188.35 -1.91 -23.48 16 22 C 0.07 2.66 6.62 40.41 0.27 2.92 16 23 H 0.28 15.52 8.29 -92.71 -0.77 14.75 16 24 H 0.08 3.68 7.64 -2.39 -0.02 3.66 16 25 H 0.08 3.67 7.67 -2.39 -0.02 3.65 16 26 H 0.14 4.25 6.20 -2.91 -0.02 4.23 16 27 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 31 H 0.17 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -90.10 280.79 4.64 -85.46 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 1.16 Total: 16.97 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 3.56 Total: -12.88 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -1.65 Total: -71.75 kcal Atomic # 8 Polarization: -58.83 SS G_CDS: -0.46 Total: -59.28 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -90.10 4.64 -85.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041246853.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.178 kcal (2) G-P(sol) polarization free energy of solvation -90.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds