Wall clock time and date at job start Mon Mar 30 2020 07:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99925 * 2 1 4 4 H 1.48497 * 109.46964 * 269.99748 * 3 2 1 5 5 H 1.48502 * 109.47035 * 29.99580 * 3 2 1 6 6 H 1.48499 * 109.47257 * 149.99655 * 3 2 1 7 7 C 1.37875 * 120.00563 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99491 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46883 * 180.02562 * 11 10 9 13 13 C 1.39912 * 119.99353 * 179.97438 * 12 11 10 14 14 C 1.38810 * 120.07122 * 359.72200 * 13 12 11 15 15 C 1.38163 * 119.96383 * 179.76571 * 14 13 12 16 16 C 1.38373 * 120.09597 * 0.51058 * 15 14 13 17 17 Cl 1.73597 * 119.93044 * 179.76152 * 16 15 14 18 18 C 1.38380 * 120.13255 * 359.74571 * 16 15 14 19 19 C 1.38284 * 120.04054 * 359.97438 * 18 16 15 20 20 F 1.35097 * 120.05006 * 179.97438 * 19 18 16 21 21 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 23 23 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 24 24 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 25 25 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 26 26 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 27 27 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 28 28 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 29 29 H 1.08000 * 120.01969 * 359.97438 * 14 13 12 30 30 H 1.07998 * 119.95092 * 180.25075 * 15 14 13 31 31 H 1.08000 * 119.97987 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0400 -4.0176 0.0015 13 6 7.4156 -4.2732 0.0019 14 6 8.3188 -3.2192 -0.0029 15 6 9.6767 -3.4740 0.0023 16 6 10.1379 -4.7786 0.0017 17 17 11.8450 -5.0939 0.0021 18 6 9.2410 -5.8324 0.0011 19 6 7.8807 -5.5838 0.0017 20 9 7.0049 -6.6124 0.0006 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8911 23 1 3.8752 -0.6803 -0.8889 24 1 3.6587 -3.1501 -0.8892 25 1 3.6580 -3.1505 0.8907 26 1 5.9157 -2.1223 -0.8873 27 1 5.9142 -2.1229 0.8927 28 1 5.4097 -4.7548 0.0008 29 1 7.9603 -2.2004 -0.0073 30 1 10.3793 -2.6538 0.0027 31 1 9.6036 -6.8497 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042221194.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:39 Heat of formation + Delta-G solvation = -59.857996 kcal Electronic energy + Delta-G solvation = -15846.348015 eV Core-core repulsion = 12873.546031 eV Total energy + Delta-G solvation = -2972.801985 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.86674 -40.34183 -37.91341 -36.98293 -35.37154 -33.56159 -31.69238 -30.40195 -28.05489 -25.11933 -23.68541 -22.68990 -21.94951 -19.08967 -18.85721 -18.08038 -17.46242 -16.80768 -16.34981 -16.23791 -16.13853 -15.45048 -15.03183 -14.73358 -14.44989 -14.38576 -13.90239 -13.75328 -13.20363 -12.91511 -12.79384 -12.42553 -12.36659 -11.88125 -11.81458 -11.68467 -11.59482 -11.33289 -10.82990 -10.76143 -9.95715 -8.43145 -8.29176 -6.34544 0.11206 0.22854 1.19488 1.38929 1.41022 1.52638 2.30052 2.37623 2.52932 3.06768 3.23667 3.70071 3.98012 4.08683 4.18218 4.20513 4.42550 4.57292 4.66340 4.87662 4.90329 5.00074 5.01574 5.08714 5.21072 5.43955 5.56070 5.58122 5.66020 6.12965 6.27932 6.57671 6.74508 7.30552 8.87825 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.039417 B = 0.003556 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.178232 B = 7872.129310 C = 8556.558499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.238 1.238 7 C -0.537 4.537 8 H 0.028 0.972 9 C -0.008 4.008 10 C -0.105 4.105 11 C 0.130 3.870 12 N -0.739 5.739 13 C 0.190 3.810 14 C -0.169 4.169 15 C -0.059 4.059 16 C -0.081 4.081 17 Cl -0.066 7.066 18 C -0.095 4.095 19 C 0.006 3.994 20 F -0.147 7.147 21 H 0.266 0.734 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.404 0.596 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.266 -7.653 0.023 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.161 1.161 7 C -0.575 4.575 8 H 0.046 0.954 9 C -0.046 4.046 10 C -0.143 4.143 11 C 0.007 3.993 12 N -0.366 5.366 13 C 0.083 3.917 14 C -0.192 4.192 15 C -0.078 4.078 16 C -0.110 4.110 17 Cl -0.037 7.037 18 C -0.115 4.115 19 C -0.018 4.018 20 F -0.126 7.126 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.239 0.761 29 H 0.172 0.828 30 H 0.178 0.822 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 24.154 -7.404 0.026 25.263 hybrid contribution -0.900 -0.089 -0.021 0.904 sum 23.255 -7.493 0.005 24.432 Atomic orbital electron populations 1.70084 1.08573 1.28254 1.52671 1.26113 0.95647 1.03913 0.94014 0.85588 0.79689 0.77655 0.79289 1.19085 1.21391 1.16104 1.21519 0.92407 0.93004 1.50554 0.95378 1.19437 0.93617 0.94235 0.97283 1.21474 0.93315 0.98257 1.01287 1.21481 0.93858 0.81876 1.02085 1.44909 1.02746 1.08650 1.80328 1.18196 0.85682 0.92316 0.95494 1.20766 0.91743 0.98679 1.07999 1.21123 0.95323 0.95538 0.95800 1.20357 0.85000 0.94148 1.11499 1.98358 1.11964 1.96075 1.97305 1.20836 0.89781 1.00826 1.00061 1.17075 0.87332 0.82586 1.14839 1.91439 1.68638 1.57552 1.95008 0.92522 0.95382 0.95513 0.92836 0.92859 0.90910 0.90969 0.76123 0.82791 0.82153 0.82835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.65 13.96 21.45 0.30 -59.35 16 2 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 3 Si 0.96 42.59 27.47 68.60 1.88 44.47 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 7 C -0.54 -30.23 9.66 25.60 0.25 -29.98 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 9 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 10 C -0.11 -3.69 5.27 30.60 0.16 -3.53 16 11 C 0.13 3.43 4.92 86.38 0.42 3.86 16 12 N -0.74 -18.54 5.74 -339.15 -1.95 -20.49 16 13 C 0.19 4.43 6.66 38.19 0.25 4.68 16 14 C -0.17 -3.27 9.31 22.39 0.21 -3.06 16 15 C -0.06 -0.98 9.82 22.28 0.22 -0.77 16 16 C -0.08 -1.48 6.32 22.34 0.14 -1.34 16 17 Cl -0.07 -1.08 28.95 -2.72 -0.08 -1.16 16 18 C -0.10 -1.88 9.80 22.31 0.22 -1.66 16 19 C 0.01 0.14 7.31 22.48 0.16 0.30 16 20 F -0.15 -3.77 16.64 44.97 0.75 -3.02 16 21 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 22 H 0.03 1.16 7.20 -2.39 -0.02 1.15 16 23 H 0.03 1.09 7.57 -2.39 -0.02 1.07 16 24 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 1.77 7.94 -2.39 -0.02 1.75 16 27 H 0.07 1.77 7.96 -2.39 -0.02 1.75 16 28 H 0.40 10.26 7.96 -92.71 -0.74 9.52 16 29 H 0.15 2.58 6.74 -2.91 -0.02 2.56 16 30 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -63.83 286.16 3.88 -59.94 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.35 Total: 10.88 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 2.62 Total: -31.27 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -1.65 Total: -79.84 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.75 Total: -3.02 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.47 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -63.83 3.88 -59.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221194.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.086 kcal (2) G-P(sol) polarization free energy of solvation -63.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds