Wall clock time and date at job start Mon Mar 30 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00416 * 2 1 4 4 H 1.48496 * 109.47317 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46801 * 300.00317 * 3 2 1 6 6 H 1.48500 * 109.47022 * 59.99767 * 3 2 1 7 7 C 1.37884 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47030 * 180.02562 * 9 7 2 11 11 O 1.20830 * 119.99944 * 0.02562 * 10 9 7 12 12 O 1.34257 * 120.00213 * 179.97438 * 10 9 7 13 13 C 1.35918 * 117.00192 * 185.77036 * 12 10 9 14 14 C 1.39834 * 119.62174 * 68.97335 * 13 12 10 15 15 C 1.35978 * 121.00555 * 180.02562 * 14 13 12 16 16 C 1.40644 * 119.82113 * 0.22091 * 15 14 13 17 17 N 1.33679 * 121.00452 * 180.27195 * 16 15 14 18 18 C 1.31078 * 121.34162 * 179.79680 * 17 16 15 19 19 C 1.39340 * 121.74848 * 359.70545 * 18 17 16 20 20 C 1.36564 * 119.93364 * 0.02562 * 19 18 17 21 21 C 1.40799 * 118.15442 * 0.02562 * 20 19 18 22 22 C 1.36608 * 119.62497 * 248.98998 * 13 12 10 23 23 H 0.97000 * 119.99664 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47080 * 59.99701 * 9 7 2 25 25 H 1.09003 * 109.46930 * 299.99714 * 9 7 2 26 26 H 1.07994 * 119.49691 * 0.02562 * 14 13 12 27 27 H 1.07996 * 120.08312 * 179.97438 * 15 14 13 28 28 H 1.07999 * 119.13143 * 179.73363 * 18 17 16 29 29 H 1.08006 * 120.03068 * 179.97438 * 19 18 17 30 30 H 1.07997 * 120.92315 * 179.97438 * 20 19 18 31 31 H 1.07997 * 120.21221 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0018 11 8 3.4182 -3.4239 0.0031 12 8 1.7827 -4.9105 0.0025 13 6 2.7130 -5.8938 0.1254 14 6 3.3932 -6.0543 1.3366 15 6 4.3296 -7.0282 1.4903 16 6 4.6269 -7.8882 0.4179 17 7 5.5392 -8.8570 0.5446 18 6 5.8187 -9.6646 -0.4492 19 6 5.1777 -9.5593 -1.6820 20 6 4.2311 -8.5947 -1.8777 21 6 3.9344 -7.7284 -0.8081 22 6 2.9729 -6.7139 -0.9357 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1716 -5.3946 2.1624 27 1 4.8463 -7.1385 2.4322 28 1 6.5652 -10.4324 -0.3089 29 1 5.4300 -10.2394 -2.4822 30 1 3.7247 -8.4984 -2.8267 31 1 2.4428 -6.5817 -1.8673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049820387.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:56 Heat of formation + Delta-G solvation = -28.001954 kcal Electronic energy + Delta-G solvation = -17570.196718 eV Core-core repulsion = 14588.836175 eV Total energy + Delta-G solvation = -2981.360543 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.16650 -40.12134 -37.15999 -35.64769 -33.59037 -33.15378 -30.47121 -29.99811 -28.96935 -24.83867 -24.19125 -23.26350 -22.24453 -20.80251 -18.31823 -17.63782 -17.23359 -16.54856 -16.07411 -15.67209 -15.38025 -14.54283 -14.50772 -14.32262 -14.00764 -13.56514 -13.18507 -12.93732 -12.37827 -12.30642 -11.94561 -11.47295 -11.44450 -10.91623 -10.83198 -10.68505 -10.53332 -10.14093 -9.63161 -9.58138 -9.44605 -8.74808 -8.59256 -8.20404 -6.21607 -4.24519 0.28583 0.68298 1.89709 2.65059 3.05678 3.25519 3.32795 3.38936 3.53368 4.06934 4.19361 4.36492 4.49808 4.60949 4.76394 4.93169 4.98045 5.15755 5.16938 5.35385 5.57852 5.65513 5.81978 5.95241 6.08054 6.22372 6.34139 6.41651 6.68658 7.00311 7.08736 7.15504 7.78338 7.79737 7.96718 8.67507 8.85919 9.41329 10.90091 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.046255 B = 0.004004 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.199886 B = 6991.934402 C = 7070.767576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.523 4.523 8 H 0.078 0.922 9 C 0.035 3.965 10 C 0.460 3.540 11 O -0.495 6.495 12 O -0.310 6.310 13 C 0.113 3.887 14 C -0.104 4.104 15 C -0.079 4.079 16 C 0.119 3.881 17 N -0.471 5.471 18 C 0.123 3.877 19 C -0.178 4.178 20 C -0.055 4.055 21 C -0.086 4.086 22 C -0.112 4.112 23 H 0.265 0.735 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.137 0.863 27 H 0.141 0.859 28 H 0.158 0.842 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.204 -17.721 -2.035 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.561 4.561 8 H 0.096 0.904 9 C -0.001 4.001 10 C 0.305 3.695 11 O -0.378 6.378 12 O -0.227 6.227 13 C 0.071 3.929 14 C -0.124 4.124 15 C -0.098 4.098 16 C -0.002 4.002 17 N -0.179 5.179 18 C -0.050 4.050 19 C -0.198 4.198 20 C -0.081 4.081 21 C -0.088 4.088 22 C -0.131 4.131 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.159 0.841 28 H 0.175 0.825 29 H 0.155 0.845 30 H 0.157 0.843 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.822 -17.518 -1.186 18.837 hybrid contribution -0.033 0.923 -0.853 1.257 sum 6.789 -16.594 -2.039 18.045 Atomic orbital electron populations 1.69966 1.06073 1.27327 1.49892 1.24995 0.94977 0.99606 0.94655 0.86287 0.80217 0.82452 0.77693 1.19387 1.20766 1.20759 1.21172 0.94348 0.88564 1.52020 0.90392 1.19189 0.93209 0.86504 1.01239 1.25872 0.91482 0.81456 0.70661 1.90561 1.19003 1.83684 1.44586 1.84813 1.37683 1.16164 1.84053 1.18411 0.91255 0.90064 0.93150 1.21194 0.95601 0.98141 0.97453 1.20620 0.97168 0.93726 0.98265 1.18880 0.93817 0.94673 0.92869 1.68002 1.14215 1.03760 1.31919 1.22922 0.97143 0.96293 0.88637 1.21851 0.98472 1.00175 0.99272 1.21461 0.95860 0.92777 0.98027 1.18604 0.97894 0.97253 0.95093 1.20890 0.97562 0.96316 0.98333 0.92544 0.91804 0.91734 0.84517 0.84091 0.82508 0.84547 0.84258 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.58 8.92 -34.44 -0.31 -14.89 16 8 H 0.08 2.25 6.76 -52.49 -0.35 1.90 16 9 C 0.04 0.88 5.57 -29.03 -0.16 0.72 16 10 C 0.46 10.48 7.72 36.01 0.28 10.76 16 11 O -0.49 -12.36 14.86 -18.75 -0.28 -12.64 16 12 O -0.31 -6.10 10.01 -23.58 -0.24 -6.34 16 13 C 0.11 1.98 5.22 -39.57 -0.21 1.78 16 14 C -0.10 -1.67 9.20 -39.80 -0.37 -2.04 16 15 C -0.08 -1.16 9.97 -39.48 -0.39 -1.55 16 16 C 0.12 1.77 6.61 -84.83 -0.56 1.21 16 17 N -0.47 -6.45 10.34 -10.95 -0.11 -6.56 16 18 C 0.12 1.27 11.15 -17.46 -0.19 1.07 16 19 C -0.18 -1.61 10.03 -39.78 -0.40 -2.01 16 20 C -0.06 -0.59 9.89 -39.22 -0.39 -0.98 16 21 C -0.09 -1.22 5.74 -106.81 -0.61 -1.83 16 22 C -0.11 -1.70 9.69 -39.38 -0.38 -2.08 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.06 1.60 8.14 -51.93 -0.42 1.17 16 25 H 0.06 1.61 8.14 -51.93 -0.42 1.18 16 26 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 27 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 28 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 30 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 284.23 15.07 4.28 4.28 Total: -1.00 -31.65 284.23 -7.29 -38.94 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -2.87 Total: -1.11 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -3.79 Total: -8.30 kcal Atomic # 7 Polarization: -31.79 SS G_CDS: 0.62 Total: -31.17 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.51 Total: -18.98 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.65 -7.29 -38.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049820387.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.939 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds