Wall clock time and date at job start Mon Mar 30 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00416 * 2 1 4 4 H 1.48496 * 109.47317 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46801 * 300.00317 * 3 2 1 6 6 H 1.48500 * 109.47022 * 59.99767 * 3 2 1 7 7 C 1.37884 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47030 * 180.02562 * 9 7 2 11 11 O 1.20830 * 119.99944 * 0.02562 * 10 9 7 12 12 O 1.34257 * 120.00213 * 179.97438 * 10 9 7 13 13 C 1.35918 * 117.00192 * 185.77036 * 12 10 9 14 14 C 1.39834 * 119.62174 * 68.97335 * 13 12 10 15 15 C 1.35978 * 121.00555 * 180.02562 * 14 13 12 16 16 C 1.40644 * 119.82113 * 0.22091 * 15 14 13 17 17 N 1.33679 * 121.00452 * 180.27195 * 16 15 14 18 18 C 1.31078 * 121.34162 * 179.79680 * 17 16 15 19 19 C 1.39340 * 121.74848 * 359.70545 * 18 17 16 20 20 C 1.36564 * 119.93364 * 0.02562 * 19 18 17 21 21 C 1.40799 * 118.15442 * 0.02562 * 20 19 18 22 22 C 1.36608 * 119.62497 * 248.98998 * 13 12 10 23 23 H 0.97000 * 119.99664 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47080 * 59.99701 * 9 7 2 25 25 H 1.09003 * 109.46930 * 299.99714 * 9 7 2 26 26 H 1.07994 * 119.49691 * 0.02562 * 14 13 12 27 27 H 1.07996 * 120.08312 * 179.97438 * 15 14 13 28 28 H 1.07999 * 119.13143 * 179.73363 * 18 17 16 29 29 H 1.08006 * 120.03068 * 179.97438 * 19 18 17 30 30 H 1.07997 * 120.92315 * 179.97438 * 20 19 18 31 31 H 1.07997 * 120.21221 * 0.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0018 11 8 3.4182 -3.4239 0.0031 12 8 1.7827 -4.9105 0.0025 13 6 2.7130 -5.8938 0.1254 14 6 3.3932 -6.0543 1.3366 15 6 4.3296 -7.0282 1.4903 16 6 4.6269 -7.8882 0.4179 17 7 5.5392 -8.8570 0.5446 18 6 5.8187 -9.6646 -0.4492 19 6 5.1777 -9.5593 -1.6820 20 6 4.2311 -8.5947 -1.8777 21 6 3.9344 -7.7284 -0.8081 22 6 2.9729 -6.7139 -0.9357 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1716 -5.3946 2.1624 27 1 4.8463 -7.1385 2.4322 28 1 6.5652 -10.4324 -0.3089 29 1 5.4300 -10.2394 -2.4822 30 1 3.7247 -8.4984 -2.8267 31 1 2.4428 -6.5817 -1.8673 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049820387.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:55 Heat of formation + Delta-G solvation = -46.144462 kcal Electronic energy + Delta-G solvation = -17570.983436 eV Core-core repulsion = 14588.836175 eV Total energy + Delta-G solvation = -2982.147261 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.48349 -41.40260 -38.63633 -37.00233 -35.25002 -34.55353 -31.72642 -31.38669 -30.49194 -26.56537 -25.26690 -24.63662 -23.30135 -22.38625 -19.68327 -18.91093 -18.45759 -18.32539 -17.90074 -16.94020 -16.72762 -16.31187 -15.64618 -15.40629 -15.16565 -14.94856 -14.41339 -14.24551 -14.01820 -13.76316 -13.32607 -12.96508 -12.86143 -12.66565 -12.64831 -12.13643 -11.98725 -11.64328 -11.56142 -11.37382 -10.69528 -10.53803 -9.78884 -9.33918 -8.32733 -6.43404 -0.73086 -0.36134 0.87274 1.20770 1.40306 1.40551 1.49381 1.58037 2.13221 2.41183 3.02975 3.03232 3.26459 3.50135 3.70211 3.74601 3.91987 4.01277 4.08957 4.35660 4.51124 4.66048 4.79048 4.84736 4.96100 5.00120 5.05565 5.14589 5.18046 5.32170 5.52976 5.64865 5.77390 5.91336 6.67378 6.86548 6.94226 7.26523 8.79511 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.046255 B = 0.004004 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.199886 B = 6991.934402 C = 7070.767576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.037 3.963 10 C 0.471 3.529 11 O -0.521 6.521 12 O -0.303 6.303 13 C 0.064 3.936 14 C -0.121 4.121 15 C -0.080 4.080 16 C 0.102 3.898 17 N -0.502 5.502 18 C 0.130 3.870 19 C -0.161 4.161 20 C -0.059 4.059 21 C -0.106 4.106 22 C -0.100 4.100 23 H 0.271 0.729 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.131 0.869 27 H 0.156 0.844 28 H 0.197 0.803 29 H 0.183 0.817 30 H 0.169 0.831 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.600 -19.577 -3.452 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.000 4.000 10 C 0.317 3.683 11 O -0.408 6.408 12 O -0.219 6.219 13 C 0.023 3.977 14 C -0.141 4.141 15 C -0.099 4.099 16 C -0.018 4.018 17 N -0.211 5.211 18 C -0.042 4.042 19 C -0.180 4.180 20 C -0.085 4.085 21 C -0.108 4.108 22 C -0.119 4.119 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.149 0.851 27 H 0.173 0.827 28 H 0.213 0.787 29 H 0.200 0.800 30 H 0.187 0.813 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.194 -19.399 -2.600 21.218 hybrid contribution -0.354 1.190 -0.498 1.338 sum 7.840 -18.209 -3.098 20.065 Atomic orbital electron populations 1.70038 1.07239 1.28565 1.50014 1.25799 0.95868 1.02822 0.93896 0.85302 0.78510 0.78290 0.78381 1.19795 1.19555 1.19613 1.21338 0.93871 0.90327 1.52971 0.91986 1.18985 0.93329 0.86981 1.00723 1.25253 0.90392 0.82494 0.70136 1.90530 1.19796 1.84539 1.45901 1.84742 1.38263 1.15376 1.83514 1.18719 0.93282 0.90706 0.94954 1.21167 0.96675 0.99155 0.97149 1.20793 0.96559 0.93308 0.99223 1.19076 0.94448 0.95168 0.93155 1.68061 1.14761 1.04555 1.33708 1.23769 0.96677 0.95430 0.88306 1.22369 0.96410 0.99499 0.99772 1.21878 0.96337 0.92152 0.98108 1.18853 0.97813 0.97919 0.96221 1.21144 0.97090 0.95627 0.98039 0.91958 0.92247 0.92263 0.85080 0.82679 0.78650 0.79981 0.81332 0.82645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.57 13.29 21.45 0.28 -52.28 16 2 C 0.02 0.89 5.46 84.66 0.46 1.35 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.40 8.92 25.60 0.23 -31.17 16 8 H 0.06 3.70 6.76 -2.91 -0.02 3.68 16 9 C 0.04 1.91 5.57 29.10 0.16 2.07 16 10 C 0.47 22.41 7.72 71.24 0.55 22.96 16 11 O -0.52 -27.15 14.86 21.95 0.33 -26.82 16 12 O -0.30 -12.45 10.01 4.68 0.05 -12.40 16 13 C 0.06 2.35 5.22 22.27 0.12 2.46 16 14 C -0.12 -4.13 9.20 22.13 0.20 -3.92 16 15 C -0.08 -2.41 9.97 22.33 0.22 -2.19 16 16 C 0.10 2.96 6.61 40.31 0.27 3.23 16 17 N -0.50 -12.72 10.34 -188.57 -1.95 -14.67 16 18 C 0.13 2.15 11.15 85.07 0.95 3.10 16 19 C -0.16 -2.12 10.03 22.14 0.22 -1.89 16 20 C -0.06 -1.05 9.89 22.50 0.22 -0.83 16 21 C -0.11 -2.83 5.74 -21.28 -0.12 -2.96 16 22 C -0.10 -3.03 9.69 22.40 0.22 -2.81 16 23 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 24 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 25 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 26 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 27 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 28 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 29 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 30 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -70.10 284.23 5.58 -64.51 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.15 Total: 6.26 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 3.70 Total: -10.60 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -1.66 Total: -66.96 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: 0.37 Total: -39.22 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -70.10 5.58 -64.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049820387.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.369 kcal (2) G-P(sol) polarization free energy of solvation -70.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds