Wall clock time and date at job start Mon Mar 30 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00266 * 2 1 4 4 H 1.48504 * 109.47501 * 240.00431 * 3 2 1 5 5 H 1.48496 * 109.46968 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47191 * 120.00338 * 3 2 1 7 7 C 1.37880 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00250 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47263 * 180.02562 * 9 7 2 11 11 O 1.20830 * 120.00051 * 0.02562 * 10 9 7 12 12 O 1.34257 * 120.00336 * 179.97438 * 10 9 7 13 13 C 1.35867 * 117.00023 * 185.39324 * 12 10 9 14 14 C 1.36604 * 120.17974 * 261.00756 * 13 12 10 15 15 C 1.39195 * 121.00408 * 179.97438 * 14 13 12 16 16 C 1.36212 * 120.93765 * 359.80862 * 15 14 13 17 17 C 1.40409 * 119.72722 * 359.97263 * 16 15 14 18 18 C 1.40787 * 121.37129 * 179.97438 * 17 16 15 19 19 C 1.36576 * 118.14648 * 180.02562 * 18 17 16 20 20 C 1.39331 * 119.93413 * 0.02562 * 19 18 17 21 21 N 1.31093 * 121.73224 * 0.02562 * 20 19 18 22 22 C 1.33594 * 121.33023 * 359.95438 * 21 20 19 23 23 H 0.97004 * 119.99759 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47229 * 60.01012 * 9 7 2 25 25 H 1.09001 * 109.47236 * 300.00490 * 9 7 2 26 26 H 1.08001 * 119.50131 * 359.74727 * 14 13 12 27 27 H 1.07997 * 119.53248 * 179.78391 * 15 14 13 28 28 H 1.07998 * 120.13638 * 179.97438 * 16 15 14 29 29 H 1.07995 * 120.92417 * 0.02562 * 18 17 16 30 30 H 1.08007 * 120.03233 * 179.97438 * 19 18 17 31 31 H 1.07998 * 119.13538 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 8 3.4182 -3.4239 -0.0001 12 8 1.7827 -4.9104 0.0000 13 6 2.7135 -5.8936 0.1137 14 6 3.1534 -6.5547 -0.9978 15 6 4.1067 -7.5644 -0.9011 16 6 4.6310 -7.9193 0.3049 17 6 4.2072 -7.2596 1.4696 18 6 4.7256 -7.5988 2.7339 19 6 4.2664 -6.9149 3.8232 20 6 3.3107 -5.9136 3.6633 21 7 2.8297 -5.6015 2.4844 22 6 3.2369 -6.2316 1.3790 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5568 -0.8904 25 1 0.6246 -2.5570 0.8896 26 1 2.7528 -6.2926 -1.9659 27 1 4.4350 -8.0739 -1.7950 28 1 5.3697 -8.7049 0.3649 29 1 5.4658 -8.3781 2.8393 30 1 4.6430 -7.1504 4.8076 31 1 2.9563 -5.3813 4.5335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049820388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:13 Heat of formation + Delta-G solvation = -25.305117 kcal Electronic energy + Delta-G solvation = -18033.693281 eV Core-core repulsion = 15052.449681 eV Total energy + Delta-G solvation = -2981.243599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.16221 -39.63614 -37.06983 -35.94999 -33.09165 -32.96751 -30.58783 -29.83779 -28.81963 -24.64065 -24.04989 -23.63438 -22.15557 -20.14516 -18.42046 -17.59241 -17.05443 -16.47135 -15.96819 -15.69538 -15.24820 -14.64953 -14.47045 -14.08980 -13.81485 -13.52282 -13.03782 -12.78179 -12.17505 -12.06607 -11.84660 -11.62245 -11.28828 -10.88721 -10.71178 -10.52983 -10.29478 -10.05396 -9.48677 -9.38470 -9.33093 -8.80458 -8.48973 -8.06163 -6.11669 -4.13773 0.34930 0.80407 1.90536 2.87181 3.24115 3.34920 3.36989 3.41292 3.63072 4.18326 4.29421 4.43361 4.60472 4.72911 4.84754 4.87470 5.09558 5.25902 5.27013 5.30156 5.59263 5.73070 5.91786 5.98810 6.23119 6.28925 6.36338 6.50833 6.79307 7.14682 7.24353 7.31283 7.88526 7.99629 8.09456 8.86904 8.95972 9.50698 11.00155 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.005360 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.222146 B = 5222.358412 C = 5675.677434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.075 0.925 9 C 0.038 3.962 10 C 0.470 3.530 11 O -0.501 6.501 12 O -0.301 6.301 13 C 0.133 3.867 14 C -0.118 4.118 15 C -0.097 4.097 16 C -0.110 4.110 17 C -0.092 4.092 18 C -0.063 4.063 19 C -0.172 4.172 20 C 0.127 3.873 21 N -0.453 5.453 22 C 0.117 3.883 23 H 0.265 0.735 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.436 -17.239 3.630 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.093 0.907 9 C 0.001 3.999 10 C 0.316 3.684 11 O -0.385 6.385 12 O -0.217 6.217 13 C 0.090 3.910 14 C -0.139 4.139 15 C -0.115 4.115 16 C -0.129 4.129 17 C -0.094 4.094 18 C -0.089 4.089 19 C -0.192 4.192 20 C -0.046 4.046 21 N -0.161 5.161 22 C -0.006 4.006 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.011 -16.364 3.412 18.127 hybrid contribution 1.102 0.175 0.179 1.130 sum 8.113 -16.189 3.591 18.461 Atomic orbital electron populations 1.69954 1.06028 1.27358 1.50037 1.24977 0.94961 0.99464 0.94815 0.86406 0.79341 0.81904 0.78926 1.20016 1.21139 1.20032 1.21084 0.94200 0.88659 1.51814 0.90659 1.19134 0.93218 0.86470 1.01081 1.25718 0.91304 0.81296 0.70118 1.90518 1.19160 1.83702 1.45145 1.84738 1.36940 1.15956 1.84115 1.18181 0.91324 0.90726 0.90737 1.21008 0.97025 0.97639 0.98184 1.20728 0.96047 0.96611 0.98082 1.20935 1.00424 0.99969 0.91539 1.18700 0.98035 0.97573 0.95080 1.21395 0.97818 0.98440 0.91290 1.21915 0.99262 0.98011 0.99997 1.23033 0.92516 0.93801 0.95201 1.68031 1.24886 1.24901 0.98250 1.19082 0.94716 0.93982 0.92786 0.92545 0.92056 0.91717 0.84443 0.84901 0.85037 0.84330 0.84488 0.82231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.24 8.92 -34.44 -0.31 -15.55 16 8 H 0.08 2.28 6.76 -52.48 -0.35 1.92 16 9 C 0.04 1.02 5.57 -29.04 -0.16 0.86 16 10 C 0.47 11.79 7.80 36.01 0.28 12.07 16 11 O -0.50 -13.60 15.20 -18.75 -0.29 -13.89 16 12 O -0.30 -6.69 9.82 -23.42 -0.23 -6.92 16 13 C 0.13 2.60 4.96 -39.11 -0.19 2.41 16 14 C -0.12 -1.85 9.87 -39.82 -0.39 -2.25 16 15 C -0.10 -1.18 9.95 -39.95 -0.40 -1.57 16 16 C -0.11 -1.30 9.77 -39.49 -0.39 -1.69 16 17 C -0.09 -1.33 5.74 -106.81 -0.61 -1.94 16 18 C -0.06 -0.72 9.90 -39.22 -0.39 -1.10 16 19 C -0.17 -1.91 10.03 -39.78 -0.40 -2.31 16 20 C 0.13 1.82 11.15 -17.46 -0.19 1.63 16 21 N -0.45 -8.67 10.07 -10.89 -0.11 -8.78 16 22 C 0.12 2.17 6.57 -84.74 -0.56 1.61 16 23 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 25 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 26 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 284.61 15.07 4.29 4.29 Total: -1.00 -34.64 284.61 -7.30 -41.94 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -2.87 Total: -1.95 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -3.81 Total: -6.22 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.63 Total: -34.34 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.51 Total: -20.81 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.64 -7.30 -41.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049820388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.636 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds