Wall clock time and date at job start Mon Mar 30 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00266 * 2 1 4 4 H 1.48504 * 109.47501 * 240.00431 * 3 2 1 5 5 H 1.48496 * 109.46968 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47191 * 120.00338 * 3 2 1 7 7 C 1.37880 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00250 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47263 * 180.02562 * 9 7 2 11 11 O 1.20830 * 120.00051 * 0.02562 * 10 9 7 12 12 O 1.34257 * 120.00336 * 179.97438 * 10 9 7 13 13 C 1.35867 * 117.00023 * 185.39324 * 12 10 9 14 14 C 1.36604 * 120.17974 * 261.00756 * 13 12 10 15 15 C 1.39195 * 121.00408 * 179.97438 * 14 13 12 16 16 C 1.36212 * 120.93765 * 359.80862 * 15 14 13 17 17 C 1.40409 * 119.72722 * 359.97263 * 16 15 14 18 18 C 1.40787 * 121.37129 * 179.97438 * 17 16 15 19 19 C 1.36576 * 118.14648 * 180.02562 * 18 17 16 20 20 C 1.39331 * 119.93413 * 0.02562 * 19 18 17 21 21 N 1.31093 * 121.73224 * 0.02562 * 20 19 18 22 22 C 1.33594 * 121.33023 * 359.95438 * 21 20 19 23 23 H 0.97004 * 119.99759 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47229 * 60.01012 * 9 7 2 25 25 H 1.09001 * 109.47236 * 300.00490 * 9 7 2 26 26 H 1.08001 * 119.50131 * 359.74727 * 14 13 12 27 27 H 1.07997 * 119.53248 * 179.78391 * 15 14 13 28 28 H 1.07998 * 120.13638 * 179.97438 * 16 15 14 29 29 H 1.07995 * 120.92417 * 0.02562 * 18 17 16 30 30 H 1.08007 * 120.03233 * 179.97438 * 19 18 17 31 31 H 1.07998 * 119.13538 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 8 3.4182 -3.4239 -0.0001 12 8 1.7827 -4.9104 0.0000 13 6 2.7135 -5.8936 0.1137 14 6 3.1534 -6.5547 -0.9978 15 6 4.1067 -7.5644 -0.9011 16 6 4.6310 -7.9193 0.3049 17 6 4.2072 -7.2596 1.4696 18 6 4.7256 -7.5988 2.7339 19 6 4.2664 -6.9149 3.8232 20 6 3.3107 -5.9136 3.6633 21 7 2.8297 -5.6015 2.4844 22 6 3.2369 -6.2316 1.3790 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5568 -0.8904 25 1 0.6246 -2.5570 0.8896 26 1 2.7528 -6.2926 -1.9659 27 1 4.4350 -8.0739 -1.7950 28 1 5.3697 -8.7049 0.3649 29 1 5.4658 -8.3781 2.8393 30 1 4.6430 -7.1504 4.8076 31 1 2.9563 -5.3813 4.5335 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049820388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:13 Heat of formation + Delta-G solvation = -47.379883 kcal Electronic energy + Delta-G solvation = -18034.650514 eV Core-core repulsion = 15052.449681 eV Total energy + Delta-G solvation = -2982.200833 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.50428 -41.10753 -38.45094 -37.46007 -35.26494 -34.10015 -31.63389 -31.58922 -30.37077 -26.49000 -25.29772 -24.70658 -23.67436 -21.70591 -19.50147 -19.20016 -18.43579 -18.20109 -17.90527 -17.08835 -16.71582 -16.34332 -15.69660 -15.36035 -15.16220 -14.78794 -14.36641 -14.16738 -13.96179 -13.58350 -13.15639 -12.90739 -12.85343 -12.73061 -12.62877 -12.12030 -11.92735 -11.62369 -11.59185 -11.25618 -10.70879 -10.48208 -9.85979 -9.21220 -8.33190 -6.44994 -0.71403 -0.24228 0.80252 1.29461 1.37944 1.42119 1.50517 1.79158 2.13605 2.40434 3.01530 3.06241 3.24529 3.62847 3.74841 3.89306 4.01665 4.01763 4.19363 4.42823 4.50819 4.66411 4.82875 4.95128 4.97903 5.02973 5.04122 5.19944 5.31348 5.42449 5.57273 5.64514 5.84145 5.90889 6.64281 6.89713 7.03568 7.24346 8.79141 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.005360 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.222146 B = 5222.358412 C = 5675.677434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.040 3.960 10 C 0.478 3.522 11 O -0.529 6.529 12 O -0.302 6.302 13 C 0.057 3.943 14 C -0.109 4.109 15 C -0.106 4.106 16 C -0.081 4.081 17 C -0.114 4.114 18 C -0.049 4.049 19 C -0.169 4.169 20 C 0.118 3.882 21 N -0.525 5.525 22 C 0.085 3.915 23 H 0.272 0.728 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.143 0.857 27 H 0.178 0.822 28 H 0.185 0.815 29 H 0.191 0.809 30 H 0.183 0.817 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.133 -19.346 4.184 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.003 3.997 10 C 0.325 3.675 11 O -0.416 6.416 12 O -0.218 6.218 13 C 0.015 3.985 14 C -0.129 4.129 15 C -0.124 4.124 16 C -0.099 4.099 17 C -0.117 4.117 18 C -0.074 4.074 19 C -0.188 4.188 20 C -0.054 4.054 21 N -0.234 5.234 22 C -0.036 4.036 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.161 0.839 27 H 0.195 0.805 28 H 0.203 0.797 29 H 0.208 0.792 30 H 0.200 0.800 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.684 -18.507 3.966 21.261 hybrid contribution 0.308 0.624 0.084 0.701 sum 9.992 -17.883 4.050 20.882 Atomic orbital electron populations 1.70042 1.07356 1.28744 1.49772 1.25863 0.95940 1.02962 0.93725 0.85352 0.78274 0.77419 0.79091 1.19298 1.19348 1.19668 1.21228 0.93685 0.90286 1.53351 0.92236 1.18909 0.93349 0.87412 1.00018 1.25109 0.90215 0.82575 0.69616 1.90459 1.19920 1.84689 1.46547 1.84647 1.38226 1.15415 1.83487 1.18771 0.94604 0.91954 0.93171 1.21378 0.96683 0.97544 0.97262 1.21198 0.94976 0.95856 1.00360 1.21595 0.99223 0.99047 0.90060 1.19165 0.97558 0.97058 0.97876 1.22019 0.97323 0.98507 0.89554 1.22340 0.97777 0.96384 1.02339 1.23600 0.92843 0.94557 0.94399 1.67938 1.27895 1.27621 0.99949 1.19332 0.96312 0.95776 0.92187 0.91881 0.92627 0.93282 0.83916 0.80487 0.79749 0.79159 0.79956 0.80721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.29 13.29 21.45 0.28 -55.01 16 2 C 0.01 0.87 5.46 84.66 0.46 1.33 16 3 Si 0.98 45.85 29.54 68.60 2.03 47.88 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.55 -33.68 8.92 25.60 0.23 -33.45 16 8 H 0.06 3.78 6.76 -2.91 -0.02 3.76 16 9 C 0.04 2.32 5.57 29.10 0.16 2.48 16 10 C 0.48 25.81 7.80 71.24 0.56 26.37 16 11 O -0.53 -30.57 15.20 21.95 0.33 -30.23 16 12 O -0.30 -14.57 9.82 5.25 0.05 -14.52 16 13 C 0.06 2.34 4.96 22.57 0.11 2.46 16 14 C -0.11 -3.42 9.87 22.12 0.22 -3.20 16 15 C -0.11 -2.27 9.95 22.03 0.22 -2.05 16 16 C -0.08 -1.57 9.77 22.33 0.22 -1.35 16 17 C -0.11 -3.05 5.74 -21.28 -0.12 -3.18 16 18 C -0.05 -0.89 9.90 22.50 0.22 -0.66 16 19 C -0.17 -3.22 10.03 22.14 0.22 -3.00 16 20 C 0.12 3.37 11.15 85.07 0.95 4.32 16 21 N -0.53 -21.13 10.07 -188.36 -1.90 -23.03 16 22 C 0.09 3.27 6.57 40.41 0.27 3.53 16 23 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 25 H 0.05 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 27 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 28 H 0.19 1.60 8.06 -2.91 -0.02 1.57 16 29 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 30 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -82.38 284.61 5.66 -76.71 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 1.15 Total: 4.60 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 3.71 Total: -6.41 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -1.61 Total: -78.04 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: 0.39 Total: -44.75 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -82.38 5.66 -76.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049820388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.334 kcal (2) G-P(sol) polarization free energy of solvation -82.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds