Wall clock time and date at job start Mon Mar 30 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00259 * 2 1 4 4 H 1.48493 * 109.47313 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47093 * 300.00556 * 3 2 1 6 6 H 1.48498 * 109.46888 * 60.00056 * 3 2 1 7 7 C 1.37874 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00010 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47381 * 179.97438 * 9 7 2 11 11 C 1.35902 * 117.00335 * 179.97438 * 10 9 7 12 12 C 1.38755 * 120.05116 * 179.97438 * 11 10 9 13 13 C 1.38130 * 119.97316 * 180.02562 * 12 11 10 14 14 C 1.38270 * 120.06476 * 0.26224 * 13 12 11 15 15 N 1.48019 * 119.94951 * 179.74399 * 14 13 12 16 16 O 1.21805 * 120.00029 * 359.97438 * 15 14 13 17 17 O 1.21794 * 120.00088 * 179.97438 * 15 14 13 18 18 C 1.38363 * 120.09710 * 359.48389 * 14 13 12 19 19 Cl 1.73597 * 119.98682 * 180.26088 * 18 14 13 20 20 C 1.38281 * 120.03041 * 0.51279 * 18 14 13 21 21 H 0.97005 * 119.99840 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47288 * 59.99698 * 9 7 2 23 23 H 1.09000 * 109.46682 * 299.99826 * 9 7 2 24 24 H 1.08010 * 120.01570 * 0.02562 * 12 11 10 25 25 H 1.08002 * 119.96529 * 179.97438 * 13 12 11 26 26 H 1.07995 * 120.03747 * 179.76986 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 2.1795 -3.5853 -0.0027 11 6 1.6601 -4.8412 -0.0033 12 6 2.5044 -5.9423 -0.0047 13 6 1.9747 -7.2180 -0.0059 14 6 0.6039 -7.3989 -0.0110 15 7 0.0391 -8.7670 -0.0179 16 8 0.7817 -9.7325 -0.0196 17 8 -1.1683 -8.9274 -0.0220 18 6 -0.2406 -6.3029 -0.0042 19 17 -1.9612 -6.5333 -0.0038 20 6 0.2853 -5.0240 -0.0030 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6240 -2.5574 0.8880 24 1 3.5753 -5.8020 -0.0050 25 1 2.6320 -8.0750 -0.0074 26 1 -0.3737 -4.1684 -0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050470131.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:48 Heat of formation + Delta-G solvation = -24.549929 kcal Electronic energy + Delta-G solvation = -16121.938155 eV Core-core repulsion = 13002.461359 eV Total energy + Delta-G solvation = -3119.476796 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.98596 -40.06869 -37.58722 -36.61473 -36.22469 -33.22141 -31.25421 -31.05629 -28.12440 -25.81270 -24.01964 -22.63152 -21.84081 -19.26809 -18.51271 -17.93311 -17.38843 -16.89118 -15.94397 -15.30167 -15.18207 -14.82151 -14.14538 -13.70661 -13.41974 -13.23536 -12.35681 -11.90386 -11.81907 -11.39283 -11.23920 -11.22071 -11.20354 -10.95164 -10.66858 -10.43884 -10.30601 -9.61326 -9.23987 -8.90745 -8.44000 -6.48621 -4.54923 0.00931 0.81001 1.47194 1.51139 1.86067 3.09124 3.16209 3.20534 3.24926 3.57210 4.16256 4.27675 4.66159 4.75766 4.89458 4.99952 5.32561 5.54648 5.64947 5.87696 6.20455 6.42410 6.54034 6.72725 7.34819 7.61634 7.84238 7.87068 8.54074 9.12011 10.62228 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.040590 B = 0.004784 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.663894 B = 5851.151976 C = 6525.657810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.533 4.533 8 H 0.075 0.925 9 C 0.183 3.817 10 O -0.291 6.291 11 C 0.220 3.780 12 C -0.165 4.165 13 C -0.006 4.006 14 C -0.106 4.106 15 N 0.043 4.957 16 O -0.184 6.184 17 O -0.156 6.156 18 C 0.063 3.937 19 Cl -0.013 7.013 20 C -0.211 4.211 21 H 0.270 0.730 22 H 0.031 0.969 23 H 0.032 0.968 24 H 0.157 0.843 25 H 0.161 0.839 26 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 -10.308 0.004 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.093 0.907 9 C 0.111 3.889 10 O -0.200 6.200 11 C 0.168 3.832 12 C -0.185 4.185 13 C -0.025 4.025 14 C -0.192 4.192 15 N 0.558 4.442 16 O -0.394 6.394 17 O -0.373 6.373 18 C 0.034 3.966 19 Cl 0.016 6.984 20 C -0.231 4.231 21 H 0.080 0.920 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.175 0.825 25 H 0.179 0.821 26 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.333 -9.468 0.006 9.561 hybrid contribution -0.280 0.632 0.001 0.691 sum 1.053 -8.836 0.007 8.898 Atomic orbital electron populations 1.69934 1.06179 1.28051 1.48544 1.24948 0.95111 0.99734 0.94209 0.86131 0.79916 0.81655 0.78000 1.19244 1.20478 1.20474 1.20922 0.94421 0.88147 1.53540 0.90724 1.21020 0.88676 0.81385 0.97806 1.86264 1.39628 1.11394 1.82730 1.19510 0.90646 0.87699 0.85344 1.20556 1.01362 0.88669 1.07897 1.20697 0.91318 0.98668 0.91844 1.20563 0.93871 0.81090 1.23665 1.43334 1.00874 1.02665 0.97367 1.94493 1.58306 1.31516 1.55047 1.94585 0.97052 1.92423 1.53217 1.20462 0.87083 0.92448 0.96617 1.98450 1.07206 1.97107 1.95591 1.21463 0.95842 0.96237 1.09577 0.91993 0.95081 0.95068 0.82511 0.82115 0.81608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 13.29 55.43 0.74 -23.15 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.92 19.79 29.54 -169.99 -5.02 14.77 15 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.53 -13.75 9.43 -34.44 -0.32 -14.07 15 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 15 9 C 0.18 4.24 4.49 36.01 0.16 4.40 15 10 O -0.29 -5.84 10.12 -19.43 -0.20 -6.04 15 11 C 0.22 3.64 6.69 -39.22 -0.26 3.37 15 12 C -0.17 -2.18 9.99 -39.43 -0.39 -2.58 15 13 C -0.01 -0.08 9.55 -39.61 -0.38 -0.45 15 14 C -0.11 -1.60 6.86 -79.89 -0.55 -2.14 15 15 N 0.04 0.68 4.45 33.99 0.15 0.84 15 16 O -0.18 -2.93 18.44 -29.46 -0.54 -3.48 15 17 O -0.16 -2.61 16.01 -29.46 -0.47 -3.08 15 18 C 0.06 0.97 6.32 -39.52 -0.25 0.72 15 19 Cl -0.01 -0.20 25.93 -51.86 -1.34 -1.54 15 20 C -0.21 -3.43 8.82 -39.40 -0.35 -3.78 15 21 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 22 H 0.03 0.74 7.66 -51.93 -0.40 0.34 15 23 H 0.03 0.74 7.66 -51.93 -0.40 0.35 15 24 H 0.16 1.69 8.06 -52.48 -0.42 1.27 15 25 H 0.16 1.60 7.61 -52.49 -0.40 1.20 15 26 H 0.17 2.80 6.30 -52.49 -0.33 2.47 15 LS Contribution 260.11 15.07 3.92 3.92 Total: -1.00 -26.85 260.11 -6.70 -33.55 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: -1.49 Total: -2.80 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -2.44 Total: -12.99 kcal Atomic # 7 Polarization: -23.20 SS G_CDS: 0.89 Total: -22.32 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -1.21 Total: -12.60 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.34 Total: -1.54 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.85 -6.70 -33.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050470131.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.004 kcal (2) G-P(sol) polarization free energy of solvation -26.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds