Wall clock time and date at job start Mon Mar 30 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00259 * 2 1 4 4 H 1.48493 * 109.47313 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47093 * 300.00556 * 3 2 1 6 6 H 1.48498 * 109.46888 * 60.00056 * 3 2 1 7 7 C 1.37874 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00010 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47381 * 179.97438 * 9 7 2 11 11 C 1.35902 * 117.00335 * 179.97438 * 10 9 7 12 12 C 1.38755 * 120.05116 * 179.97438 * 11 10 9 13 13 C 1.38130 * 119.97316 * 180.02562 * 12 11 10 14 14 C 1.38270 * 120.06476 * 0.26224 * 13 12 11 15 15 N 1.48019 * 119.94951 * 179.74399 * 14 13 12 16 16 O 1.21805 * 120.00029 * 359.97438 * 15 14 13 17 17 O 1.21794 * 120.00088 * 179.97438 * 15 14 13 18 18 C 1.38363 * 120.09710 * 359.48389 * 14 13 12 19 19 Cl 1.73597 * 119.98682 * 180.26088 * 18 14 13 20 20 C 1.38281 * 120.03041 * 0.51279 * 18 14 13 21 21 H 0.97005 * 119.99840 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47288 * 59.99698 * 9 7 2 23 23 H 1.09000 * 109.46682 * 299.99826 * 9 7 2 24 24 H 1.08010 * 120.01570 * 0.02562 * 12 11 10 25 25 H 1.08002 * 119.96529 * 179.97438 * 13 12 11 26 26 H 1.07995 * 120.03747 * 179.76986 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 8 2.1795 -3.5853 -0.0027 11 6 1.6601 -4.8412 -0.0033 12 6 2.5044 -5.9423 -0.0047 13 6 1.9747 -7.2180 -0.0059 14 6 0.6039 -7.3989 -0.0110 15 7 0.0391 -8.7670 -0.0179 16 8 0.7817 -9.7325 -0.0196 17 8 -1.1683 -8.9274 -0.0220 18 6 -0.2406 -6.3029 -0.0042 19 17 -1.9612 -6.5333 -0.0038 20 6 0.2853 -5.0240 -0.0030 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5563 -0.8919 23 1 0.6240 -2.5574 0.8880 24 1 3.5753 -5.8020 -0.0050 25 1 2.6320 -8.0750 -0.0074 26 1 -0.3737 -4.1684 -0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050470131.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:48 Heat of formation + Delta-G solvation = -38.547797 kcal Electronic energy + Delta-G solvation = -16122.545149 eV Core-core repulsion = 13002.461359 eV Total energy + Delta-G solvation = -3120.083789 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.24259 -41.39936 -38.95973 -37.86081 -37.48401 -35.13758 -32.46197 -32.36868 -29.91075 -27.14634 -25.62454 -23.96164 -23.21914 -20.49564 -19.78485 -19.42441 -18.65097 -18.64535 -17.41352 -16.84646 -16.52390 -16.40545 -15.39567 -14.94420 -14.74645 -14.72805 -13.95716 -13.27644 -13.16179 -13.05992 -12.80560 -12.76719 -12.48354 -12.26304 -12.16400 -12.15900 -11.55111 -11.46545 -10.79022 -10.42608 -9.83887 -8.43913 -6.57955 -1.24966 -0.35225 0.23412 0.24867 0.64664 1.40428 1.41072 1.54802 2.04936 2.07331 2.42347 2.92873 3.08458 3.43669 3.58749 3.79128 4.22697 4.29905 4.44807 4.56797 4.85039 4.88408 4.99515 5.28301 5.45250 5.71907 6.21527 6.56143 6.58834 7.13961 8.67710 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.040590 B = 0.004784 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.663894 B = 5851.151976 C = 6525.657810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.199 3.801 10 O -0.303 6.303 11 C 0.196 3.804 12 C -0.144 4.144 13 C 0.012 3.988 14 C -0.108 4.108 15 N 0.041 4.959 16 O -0.164 6.164 17 O -0.183 6.183 18 C 0.055 3.945 19 Cl -0.013 7.013 20 C -0.216 4.216 21 H 0.274 0.726 22 H 0.016 0.984 23 H 0.016 0.984 24 H 0.190 0.810 25 H 0.199 0.801 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 -11.024 0.004 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.594 4.594 8 H 0.091 0.909 9 C 0.126 3.874 10 O -0.214 6.214 11 C 0.146 3.854 12 C -0.163 4.163 13 C -0.007 4.007 14 C -0.193 4.193 15 N 0.555 4.445 16 O -0.380 6.380 17 O -0.393 6.393 18 C 0.026 3.974 19 Cl 0.017 6.983 20 C -0.236 4.236 21 H 0.083 0.917 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.207 0.793 25 H 0.216 0.784 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.049 -10.195 0.006 10.641 hybrid contribution -0.803 0.664 0.000 1.042 sum 2.246 -9.530 0.006 9.792 Atomic orbital electron populations 1.70031 1.07648 1.29112 1.49267 1.25872 0.95928 1.03216 0.93506 0.85116 0.78868 0.77221 0.78171 1.18438 1.19910 1.19897 1.21300 0.94655 0.89662 1.53773 0.90866 1.20537 0.88471 0.82075 0.96312 1.86187 1.38755 1.12147 1.84340 1.19832 0.91281 0.87181 0.87127 1.20881 1.02477 0.87430 1.05466 1.21111 0.90493 0.99507 0.89604 1.20820 0.94791 0.80373 1.23347 1.43454 1.00845 1.02962 0.97265 1.94472 1.58092 1.31721 1.53683 1.94605 0.97367 1.92608 1.54764 1.20465 0.87362 0.92422 0.97168 1.98447 1.07249 1.97053 1.95600 1.21319 0.95906 0.96164 1.10214 0.91680 0.96609 0.96592 0.79313 0.78396 0.83196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.33 13.29 21.45 0.28 -50.05 15 2 C 0.02 0.78 5.46 84.65 0.46 1.24 15 3 Si 0.98 40.28 29.54 68.60 2.03 42.30 15 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 7 C -0.56 -29.11 9.43 25.60 0.24 -28.87 15 8 H 0.07 3.75 7.81 -2.91 -0.02 3.72 15 9 C 0.20 9.50 4.49 71.24 0.32 9.82 15 10 O -0.30 -12.25 10.12 -92.44 -0.94 -13.18 15 11 C 0.20 6.33 6.69 22.50 0.15 6.48 15 12 C -0.14 -3.34 9.99 22.37 0.22 -3.12 15 13 C 0.01 0.25 9.55 22.25 0.21 0.46 15 14 C -0.11 -3.01 6.86 36.41 0.25 -2.76 15 15 N 0.04 1.22 4.45 -46.37 -0.21 1.01 15 16 O -0.16 -4.72 18.44 18.88 0.35 -4.37 15 17 O -0.18 -5.97 16.01 18.89 0.30 -5.67 15 18 C 0.05 1.67 6.32 22.31 0.14 1.81 15 19 Cl -0.01 -0.39 25.93 -2.72 -0.07 -0.47 15 20 C -0.22 -7.10 8.82 22.39 0.20 -6.90 15 21 H 0.27 13.95 8.31 -92.70 -0.77 13.18 15 22 H 0.02 0.80 7.66 -2.39 -0.02 0.78 15 23 H 0.02 0.81 7.66 -2.39 -0.02 0.79 15 24 H 0.19 3.23 8.06 -2.91 -0.02 3.21 15 25 H 0.20 2.86 7.61 -2.91 -0.02 2.83 15 26 H 0.15 5.38 6.30 -2.91 -0.02 5.36 15 Total: -1.00 -57.48 260.11 5.17 -52.31 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: 1.23 Total: -0.06 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 2.20 Total: -21.83 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.08 Total: -49.04 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.28 Total: -23.22 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.07 Total: -0.47 kcal Total: -57.48 5.17 -52.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050470131.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.762 kcal (2) G-P(sol) polarization free energy of solvation -57.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds