Wall clock time and date at job start Mon Mar 30 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86807 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47044 * 270.00273 * 3 2 1 5 5 H 1.48501 * 109.46422 * 30.00358 * 3 2 1 6 6 H 1.48497 * 109.47132 * 149.99691 * 3 2 1 7 7 C 1.38997 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00356 * 180.02562 * 7 2 1 9 9 N 1.37190 * 119.99497 * 359.97438 * 7 2 1 10 10 N 1.40260 * 126.74495 * 0.03132 * 9 7 2 11 11 N 1.28626 * 109.51727 * 179.97438 * 10 9 7 12 12 C 1.35387 * 110.32888 * 359.97438 * 11 10 9 13 13 C 1.40062 * 133.09007 * 180.02562 * 12 11 10 14 14 C 1.36595 * 119.93227 * 180.02562 * 13 12 11 15 15 Cl 1.73606 * 119.65137 * 179.72414 * 14 13 12 16 16 C 1.39041 * 120.69786 * 0.02562 * 14 13 12 17 17 Cl 1.73596 * 119.80703 * 179.97438 * 16 14 13 18 18 C 1.37953 * 120.38413 * 359.95796 * 16 14 13 19 19 C 1.37998 * 126.74239 * 180.02562 * 9 7 2 20 20 H 0.97001 * 120.00004 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.03598 * 0.02562 * 13 12 11 22 22 H 1.08005 * 120.15024 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6178 0.0000 4 1 2.4945 2.0465 -1.4001 5 1 1.4445 2.6526 0.7001 6 1 3.5446 1.4402 0.7001 7 6 2.0081 -1.2037 -0.0005 8 1 3.0880 -1.2037 -0.0001 9 7 1.3221 -2.3918 -0.0005 10 7 -0.0708 -2.5565 -0.0007 11 7 -0.3552 -3.8109 -0.0012 12 6 0.7789 -4.5503 -0.0020 13 6 1.0219 -5.9297 -0.0032 14 6 2.3059 -6.3957 -0.0033 15 17 2.5986 -8.1068 0.0024 16 6 3.3810 -5.5139 -0.0016 17 17 5.0034 -6.1314 -0.0011 18 6 3.1658 -4.1513 -0.0007 19 6 1.8670 -3.6596 -0.0005 20 1 -0.4850 0.8401 -0.0004 21 1 0.1948 -6.6243 -0.0041 22 1 4.0037 -3.4698 0.0002 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057834278.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:01 Heat of formation + Delta-G solvation = 70.090554 kcal Electronic energy + Delta-G solvation = -14090.054263 eV Core-core repulsion = 11311.850207 eV Total energy + Delta-G solvation = -2778.204055 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 256.982 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.46885 -38.90978 -37.40687 -36.86871 -36.24664 -33.93899 -31.23499 -30.42541 -27.77840 -24.78364 -23.29855 -23.03856 -19.90151 -18.78382 -17.73764 -17.10555 -16.62423 -16.41388 -15.62016 -15.12574 -14.49148 -14.18121 -13.97478 -13.44003 -13.29237 -13.20376 -12.82164 -12.19973 -12.16837 -12.06205 -11.97545 -11.80755 -11.69516 -11.33136 -10.99533 -9.48374 -9.37296 -8.88988 -6.62684 -0.30488 0.31903 0.93815 1.17336 1.33769 1.37202 1.58744 1.69235 1.95038 2.39907 2.55869 2.81792 3.54431 4.02145 4.09461 4.19375 4.31988 4.68388 4.82115 4.96860 5.00696 5.35603 5.61434 5.74304 6.31705 6.85394 7.78297 8.10889 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.033608 B = 0.006466 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.934240 B = 4329.589276 C = 5152.679627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C -0.005 4.005 3 Si 1.032 2.968 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.238 1.238 7 C -0.298 4.298 8 H 0.157 0.843 9 N -0.164 5.164 10 N -0.089 5.089 11 N -0.353 5.353 12 C -0.019 4.019 13 C -0.043 4.043 14 C -0.037 4.037 15 Cl -0.045 7.045 16 C -0.051 4.051 17 Cl -0.042 7.042 18 C -0.038 4.038 19 C -0.057 4.057 20 H 0.297 0.703 21 H 0.153 0.847 22 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.607 -4.579 0.025 10.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.222 4.222 3 Si 0.848 3.152 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.161 1.161 7 C -0.438 4.438 8 H 0.175 0.825 9 N 0.062 4.938 10 N -0.063 5.063 11 N -0.214 5.214 12 C -0.158 4.158 13 C -0.065 4.065 14 C -0.069 4.069 15 Cl -0.016 7.016 16 C -0.083 4.083 17 Cl -0.013 7.013 18 C -0.060 4.060 19 C -0.181 4.181 20 H 0.108 0.892 21 H 0.171 0.829 22 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.988 -3.968 0.032 8.920 hybrid contribution 0.826 0.105 -0.015 0.832 sum 8.814 -3.863 0.018 9.623 Atomic orbital electron populations 1.70248 1.08834 1.31704 1.30871 1.27231 0.96671 1.04896 0.93407 0.84396 0.78467 0.72368 0.80003 1.18149 1.19266 1.16098 1.21316 0.94321 0.80245 1.47890 0.82545 1.46930 1.05973 1.04667 1.36253 1.82279 0.89490 1.08400 1.26179 1.74522 1.25078 0.99332 1.22465 1.19888 0.89041 0.95041 1.11835 1.19716 0.95735 0.91416 0.99673 1.19758 0.92381 0.85429 1.09347 1.98331 1.96267 1.09872 1.97134 1.19943 0.85906 0.91525 1.10930 1.98327 1.18699 1.87172 1.97124 1.19747 0.93542 0.93383 0.99366 1.19325 0.96126 0.85906 1.16760 0.89215 0.82936 0.82712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.86 11.87 21.66 0.26 -39.60 14 2 C -0.01 -0.23 5.50 84.95 0.47 0.24 14 3 Si 1.03 32.22 29.55 68.60 2.03 34.25 14 4 H -0.26 -7.74 7.11 99.48 0.71 -7.03 14 5 H -0.27 -8.26 7.11 99.48 0.71 -7.55 14 6 H -0.24 -6.69 7.11 99.48 0.71 -5.98 14 7 C -0.30 -13.98 10.26 84.04 0.86 -13.12 14 8 H 0.16 6.17 7.83 -2.91 -0.02 6.15 14 9 N -0.16 -8.59 3.80 -183.83 -0.70 -9.28 14 10 N -0.09 -5.16 11.61 37.02 0.43 -4.73 14 11 N -0.35 -19.30 12.38 -52.12 -0.65 -19.95 14 12 C -0.02 -0.92 7.27 39.62 0.29 -0.64 14 13 C -0.04 -1.65 9.81 22.33 0.22 -1.43 14 14 C -0.04 -1.27 6.28 22.08 0.14 -1.13 14 15 Cl -0.04 -1.26 27.89 -2.72 -0.08 -1.34 14 16 C -0.05 -1.74 6.32 22.40 0.14 -1.60 14 17 Cl -0.04 -1.17 27.91 -2.72 -0.08 -1.24 14 18 C -0.04 -1.43 9.80 22.35 0.22 -1.21 14 19 C -0.06 -2.69 6.88 38.90 0.27 -2.42 14 20 H 0.30 13.40 8.31 -92.71 -0.77 12.63 14 21 H 0.15 5.19 8.06 -2.91 -0.02 5.17 14 22 H 0.16 5.00 8.06 -2.91 -0.02 4.97 14 Total: -1.00 -59.96 240.69 5.10 -54.85 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.28 Total: 8.35 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 2.60 Total: -21.31 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -0.66 Total: -73.56 kcal Atomic # 14 Polarization: 32.22 SS G_CDS: 2.03 Total: 34.25 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.15 Total: -2.58 kcal Total: -59.96 5.10 -54.85 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057834278.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.944 kcal (2) G-P(sol) polarization free energy of solvation -59.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds