Wall clock time and date at job start Mon Mar 30 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99722 * 2 1 4 4 H 1.48492 * 109.47529 * 270.00295 * 3 2 1 5 5 H 1.48496 * 109.47086 * 30.00849 * 3 2 1 6 6 H 1.48503 * 109.46666 * 150.00203 * 3 2 1 7 7 C 1.37882 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99741 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00010 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.46884 * 180.02562 * 9 7 2 11 11 C 1.35918 * 117.00147 * 180.02562 * 10 9 7 12 12 C 1.38753 * 120.46350 * 359.97438 * 11 10 9 13 13 N 1.31814 * 120.70219 * 179.97438 * 12 11 10 14 14 C 1.31871 * 121.78946 * 0.02562 * 13 12 11 15 15 C 1.38305 * 120.86942 * 0.02562 * 14 13 12 16 16 Br 1.89104 * 120.39372 * 179.97438 * 15 14 13 17 17 C 1.38660 * 119.20857 * 359.97438 * 15 14 13 18 18 H 0.96996 * 119.99826 * 359.97438 * 1 2 3 19 19 H 1.08995 * 109.47421 * 60.00137 * 9 7 2 20 20 H 1.09005 * 109.46773 * 299.99690 * 9 7 2 21 21 H 1.08002 * 119.65541 * 359.95766 * 12 11 10 22 22 H 1.08000 * 119.56358 * 179.97438 * 14 13 12 23 23 H 1.07997 * 120.81636 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 3.9879 -2.5412 -0.0022 11 6 5.3354 -2.7194 -0.0023 12 6 6.1895 -1.6259 -0.0019 13 7 7.4970 -1.7931 -0.0015 14 6 8.0438 -2.9931 -0.0019 15 6 7.2578 -4.1311 -0.0034 16 35 8.0562 -5.8454 -0.0047 17 6 5.8774 -4.0001 -0.0039 18 1 -0.4850 0.8400 0.0004 19 1 3.8753 -0.6804 0.8888 20 1 3.8745 -0.6799 -0.8912 21 1 5.7788 -0.6270 -0.0022 22 1 9.1196 -3.0885 -0.0020 23 1 5.2390 -4.8711 -0.0046 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070043657.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:22 Heat of formation + Delta-G solvation = -3.564661 kcal Electronic energy + Delta-G solvation = -11360.927160 eV Core-core repulsion = 9027.932668 eV Total energy + Delta-G solvation = -2332.994492 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 256.979 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.37710 -37.67898 -33.18212 -32.92815 -30.99716 -29.30931 -28.44255 -23.87649 -23.23073 -21.55595 -18.00547 -17.06786 -16.58171 -16.19802 -15.32937 -14.52394 -14.25253 -13.62145 -13.24569 -12.94591 -12.50752 -12.09865 -11.50398 -11.31807 -11.23202 -10.64327 -10.52320 -10.15770 -9.69930 -9.29194 -9.26013 -8.85441 -8.16200 -6.33886 -4.37773 0.91305 1.35329 1.41211 3.11048 3.16847 3.19388 3.75055 3.79944 4.15227 4.56123 4.77282 4.88032 4.95975 5.18868 5.39786 5.89471 5.93113 6.19494 6.46010 6.52530 7.20530 7.67512 7.90217 8.31301 8.73863 9.20371 10.78049 Molecular weight = 256.98amu Principal moments of inertia in cm(-1) A = 0.061668 B = 0.004954 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.933345 B = 5650.493340 C = 6089.282997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.080 3.920 3 Si 0.872 3.128 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.088 0.912 9 C 0.163 3.837 10 O -0.290 6.290 11 C 0.111 3.889 12 C 0.022 3.978 13 N -0.440 5.440 14 C 0.071 3.929 15 C -0.104 4.104 16 Br -0.040 7.040 17 C -0.098 4.098 18 H 0.271 0.729 19 H 0.024 0.976 20 H 0.019 0.981 21 H 0.167 0.833 22 H 0.161 0.839 23 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.801 -8.802 0.002 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.124 4.124 3 Si 0.698 3.302 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.106 0.894 9 C 0.090 3.910 10 O -0.201 6.201 11 C 0.059 3.941 12 C -0.137 4.137 13 N -0.149 5.149 14 C -0.089 4.089 15 C -0.186 4.186 16 Br 0.045 6.955 17 C -0.126 4.126 18 H 0.081 0.919 19 H 0.041 0.959 20 H 0.037 0.963 21 H 0.184 0.816 22 H 0.178 0.822 23 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 17.247 -8.707 0.004 19.320 hybrid contribution -0.381 0.755 -0.011 0.846 sum 16.866 -7.952 -0.007 18.646 Atomic orbital electron populations 1.69839 1.06053 1.27619 1.48531 1.24695 0.94860 0.98733 0.94070 0.86907 0.80449 0.83648 0.79203 1.19460 1.20245 1.18850 1.20694 0.87023 0.95938 1.53429 0.89417 1.21170 0.97113 0.76478 0.96240 1.86222 1.14717 1.33735 1.85377 1.20215 0.86384 0.93809 0.93691 1.23240 0.88938 0.99600 1.01882 1.67647 1.12758 1.24751 1.09766 1.22548 1.00138 0.86046 1.00144 1.22660 0.95181 0.92720 1.08029 1.96697 1.81494 1.19663 1.97669 1.20841 0.92975 0.96851 1.01919 0.91861 0.95853 0.96322 0.81617 0.82195 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.81 13.96 55.43 0.77 -25.04 14 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 14 3 Si 0.87 19.86 27.47 -169.99 -4.67 15.19 14 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 14 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 14 6 H -0.26 -5.66 6.54 56.52 0.37 -5.29 14 7 C -0.53 -14.77 9.99 -34.44 -0.34 -15.12 14 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 14 9 C 0.16 3.79 3.57 36.00 0.13 3.91 14 10 O -0.29 -6.32 10.13 -19.48 -0.20 -6.52 14 11 C 0.11 2.02 6.71 -39.08 -0.26 1.76 14 12 C 0.02 0.38 10.22 -17.37 -0.18 0.21 14 13 N -0.44 -7.15 10.35 -13.10 -0.14 -7.28 14 14 C 0.07 0.99 10.94 -17.51 -0.19 0.79 14 15 C -0.10 -1.44 6.24 -39.40 -0.25 -1.69 14 16 Br -0.04 -0.45 33.73 -68.01 -2.29 -2.74 14 17 C -0.10 -1.53 9.89 -39.12 -0.39 -1.92 14 18 H 0.27 7.32 8.31 -40.82 -0.34 6.98 14 19 H 0.02 0.53 6.74 -51.93 -0.35 0.18 14 20 H 0.02 0.42 7.11 -51.93 -0.37 0.05 14 21 H 0.17 2.81 6.32 -52.49 -0.33 2.48 14 22 H 0.16 1.76 8.06 -52.49 -0.42 1.34 14 23 H 0.15 2.15 8.06 -52.49 -0.42 1.73 14 LS Contribution 232.08 15.07 3.50 3.50 Total: -1.00 -28.47 232.08 -6.09 -34.55 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -1.49 Total: -1.72 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.58 Total: -9.94 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.64 Total: -32.32 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.20 Total: -6.52 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.67 Total: 15.19 kcal Atomic # 35 Polarization: -0.45 SS G_CDS: -2.29 Total: -2.74 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.47 -6.09 -34.55 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070043657.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.990 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds