Wall clock time and date at job start Mon Mar 30 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99794 * 2 1 4 4 H 1.48499 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46879 * 299.99847 * 3 2 1 6 6 H 1.48497 * 109.47332 * 59.99774 * 3 2 1 7 7 C 1.37871 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00474 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.47490 * 180.02562 * 9 7 2 11 11 C 1.35925 * 116.99622 * 180.02562 * 10 9 7 12 12 C 1.38700 * 120.06187 * 0.02562 * 11 10 9 13 13 C 1.38165 * 119.95468 * 179.97438 * 12 11 10 14 14 N 1.47999 * 119.96006 * 180.02562 * 13 12 11 15 15 O 1.21807 * 120.00384 * 359.97438 * 14 13 12 16 16 O 1.21800 * 120.00165 * 180.02562 * 14 13 12 17 17 C 1.38278 * 120.07341 * 359.97438 * 13 12 11 18 18 C 1.38238 * 120.12142 * 0.02562 * 17 13 12 19 19 C 1.38252 * 120.04399 * 359.97438 * 18 17 13 20 20 Cl 1.73603 * 120.03781 * 180.28170 * 19 18 17 21 21 H 0.97001 * 120.00400 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47077 * 59.99862 * 9 7 2 23 23 H 1.09008 * 109.47100 * 300.00005 * 9 7 2 24 24 H 1.07995 * 120.02357 * 359.95779 * 12 11 10 25 25 H 1.08003 * 119.93011 * 179.97438 * 17 13 12 26 26 H 1.08000 * 119.97675 * 180.02562 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0017 11 6 1.6602 -4.8413 0.0014 12 6 0.2854 -5.0245 -0.0007 13 6 -0.2404 -6.3022 -0.0016 14 7 -1.7074 -6.4977 -0.0044 15 8 -2.4506 -5.5326 -0.0053 16 8 -2.1717 -7.6238 -0.0047 17 6 0.6025 -7.3983 -0.0010 18 6 1.9733 -7.2194 0.0010 19 6 2.5047 -5.9430 0.0019 20 17 4.2261 -5.7185 -0.0029 21 1 -0.4851 0.8400 0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 -0.3737 -4.1690 -0.0013 25 1 0.1891 -8.3961 -0.0013 26 1 2.6295 -8.0771 0.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070089130.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:36 Heat of formation + Delta-G solvation = -28.469734 kcal Electronic energy + Delta-G solvation = -16237.335599 eV Core-core repulsion = 13117.688828 eV Total energy + Delta-G solvation = -3119.646772 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.06991 -40.01506 -37.37315 -36.51098 -36.42490 -33.12595 -31.73891 -30.38742 -27.91281 -26.38247 -23.93098 -22.27174 -21.93566 -19.44055 -18.56742 -17.42050 -17.17515 -16.78896 -16.31289 -15.76656 -15.28368 -14.63527 -14.36161 -13.41721 -13.21870 -12.73799 -12.27652 -11.77838 -11.76855 -11.45586 -11.23463 -11.14994 -11.04156 -11.01082 -10.88665 -10.62871 -10.35638 -9.51904 -9.39071 -8.79057 -8.20466 -6.38659 -4.44675 -0.16981 0.97663 1.39780 1.44742 2.01731 3.15511 3.21400 3.22219 3.26899 3.59615 4.22575 4.37477 4.61819 4.69222 4.98773 5.05603 5.27445 5.47003 5.66200 5.76842 6.13669 6.44662 6.52632 6.83488 7.44436 7.71600 7.75709 7.97942 8.64559 9.21574 10.72197 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.006659 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.283537 B = 4203.714102 C = 5702.851572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.184 3.816 10 O -0.287 6.287 11 C 0.168 3.832 12 C -0.144 4.144 13 C -0.001 4.001 14 N 0.028 4.972 15 O -0.150 6.150 16 O -0.165 6.165 17 C -0.104 4.104 18 C -0.074 4.074 19 C -0.042 4.042 20 Cl -0.035 7.035 21 H 0.270 0.730 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.172 0.828 25 H 0.157 0.843 26 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -13.093 0.001 13.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.113 3.887 10 O -0.199 6.199 11 C 0.117 3.883 12 C -0.164 4.164 13 C -0.084 4.084 14 N 0.548 4.452 15 O -0.368 6.368 16 O -0.379 6.379 17 C -0.123 4.123 18 C -0.093 4.093 19 C -0.070 4.070 20 Cl -0.006 7.006 21 H 0.080 0.920 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.189 0.811 25 H 0.175 0.825 26 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.562 -12.753 0.000 13.545 hybrid contribution -0.220 0.932 -0.001 0.958 sum 4.342 -11.821 -0.001 12.593 Atomic orbital electron populations 1.69947 1.06130 1.27953 1.48616 1.24941 0.95079 0.99639 0.94348 0.86154 0.79923 0.81810 0.77937 1.19287 1.20527 1.20519 1.20899 0.94381 0.88084 1.53293 0.90757 1.20972 0.88676 0.81521 0.97565 1.86332 1.38634 1.10555 1.84339 1.18679 0.89321 0.87735 0.92593 1.21269 0.95374 0.97330 1.02429 1.20892 0.79563 0.95982 1.11916 1.43608 1.03602 1.00467 0.97547 1.94602 1.56775 1.32667 1.52774 1.94491 1.79475 1.10413 1.53557 1.20701 0.92094 0.98652 1.00901 1.20786 0.94000 0.95427 0.99116 1.20629 0.86466 0.92737 1.07180 1.98392 1.08222 1.97510 1.96455 0.92041 0.95326 0.95332 0.81080 0.82547 0.82530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 13.29 55.43 0.74 -24.06 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 3 Si 0.92 20.50 29.54 -169.99 -5.02 15.48 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 15 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.53 -14.22 9.43 -34.44 -0.32 -14.55 15 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 15 9 C 0.18 4.52 4.49 36.00 0.16 4.68 15 10 O -0.29 -6.20 9.58 -19.50 -0.19 -6.39 15 11 C 0.17 3.00 6.68 -39.20 -0.26 2.74 15 12 C -0.14 -2.51 8.54 -39.44 -0.34 -2.84 15 13 C 0.00 -0.01 6.85 -79.97 -0.55 -0.56 15 14 N 0.03 0.47 4.45 33.95 0.15 0.62 15 15 O -0.15 -2.78 18.45 -29.46 -0.54 -3.32 15 16 O -0.16 -2.65 18.44 -29.46 -0.54 -3.20 15 17 C -0.10 -1.26 9.55 -39.57 -0.38 -1.64 15 18 C -0.07 -0.84 9.83 -39.58 -0.39 -1.23 15 19 C -0.04 -0.62 6.33 -39.36 -0.25 -0.87 15 20 Cl -0.04 -0.49 28.50 -51.86 -1.48 -1.97 15 21 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 22 H 0.03 0.73 7.66 -51.93 -0.40 0.33 15 23 H 0.03 0.73 7.67 -51.92 -0.40 0.33 15 24 H 0.17 3.24 5.85 -52.49 -0.31 2.93 15 25 H 0.16 1.51 7.60 -52.48 -0.40 1.11 15 26 H 0.16 1.21 8.06 -52.49 -0.42 0.78 15 LS Contribution 263.70 15.07 3.97 3.97 Total: -1.00 -28.00 263.70 -6.80 -34.81 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -1.47 Total: -3.29 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.42 Total: -12.66 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.89 Total: -23.44 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -1.27 Total: -12.91 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.97 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.00 -6.80 -34.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070089130.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.339 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds