Wall clock time and date at job start Mon Mar 30 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99794 * 2 1 4 4 H 1.48499 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46879 * 299.99847 * 3 2 1 6 6 H 1.48497 * 109.47332 * 59.99774 * 3 2 1 7 7 C 1.37871 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00474 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.47490 * 180.02562 * 9 7 2 11 11 C 1.35925 * 116.99622 * 180.02562 * 10 9 7 12 12 C 1.38700 * 120.06187 * 0.02562 * 11 10 9 13 13 C 1.38165 * 119.95468 * 179.97438 * 12 11 10 14 14 N 1.47999 * 119.96006 * 180.02562 * 13 12 11 15 15 O 1.21807 * 120.00384 * 359.97438 * 14 13 12 16 16 O 1.21800 * 120.00165 * 180.02562 * 14 13 12 17 17 C 1.38278 * 120.07341 * 359.97438 * 13 12 11 18 18 C 1.38238 * 120.12142 * 0.02562 * 17 13 12 19 19 C 1.38252 * 120.04399 * 359.97438 * 18 17 13 20 20 Cl 1.73603 * 120.03781 * 180.28170 * 19 18 17 21 21 H 0.97001 * 120.00400 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47077 * 59.99862 * 9 7 2 23 23 H 1.09008 * 109.47100 * 300.00005 * 9 7 2 24 24 H 1.07995 * 120.02357 * 359.95779 * 12 11 10 25 25 H 1.08003 * 119.93011 * 179.97438 * 17 13 12 26 26 H 1.08000 * 119.97675 * 180.02562 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0017 11 6 1.6602 -4.8413 0.0014 12 6 0.2854 -5.0245 -0.0007 13 6 -0.2404 -6.3022 -0.0016 14 7 -1.7074 -6.4977 -0.0044 15 8 -2.4506 -5.5326 -0.0053 16 8 -2.1717 -7.6238 -0.0047 17 6 0.6025 -7.3983 -0.0010 18 6 1.9733 -7.2194 0.0010 19 6 2.5047 -5.9430 0.0019 20 17 4.2261 -5.7185 -0.0029 21 1 -0.4851 0.8400 0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8904 24 1 -0.3737 -4.1690 -0.0013 25 1 0.1891 -8.3961 -0.0013 26 1 2.6295 -8.0771 0.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070089130.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:35 Heat of formation + Delta-G solvation = -44.253430 kcal Electronic energy + Delta-G solvation = -16238.020032 eV Core-core repulsion = 13117.688828 eV Total energy + Delta-G solvation = -3120.331204 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.029 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.39298 -41.37833 -38.81227 -37.76956 -37.68324 -35.14932 -32.96515 -31.74284 -29.79483 -27.72058 -25.62607 -23.56745 -23.43780 -20.80395 -19.89784 -18.81617 -18.75284 -18.38570 -17.71433 -17.20663 -16.89718 -16.45642 -15.50284 -14.88738 -14.61413 -14.22313 -13.49458 -13.46739 -13.03325 -13.02965 -12.92246 -12.81861 -12.40493 -12.38050 -12.34243 -12.22390 -12.02094 -11.49583 -10.79535 -10.52840 -9.63133 -8.44069 -6.59335 -1.45004 -0.18956 0.10039 0.18333 0.83130 1.38438 1.39134 1.53567 2.00958 2.06478 2.40503 2.91618 3.22950 3.35168 3.47281 3.86326 4.08652 4.39222 4.47683 4.55209 4.67729 4.81368 4.95072 5.20030 5.42626 5.70633 6.20172 6.41053 6.57887 7.12659 8.67994 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.006659 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.283537 B = 4203.714102 C = 5702.851572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.205 3.795 10 O -0.305 6.305 11 C 0.132 3.868 12 C -0.160 4.160 13 C -0.014 4.014 14 N 0.028 4.972 15 O -0.227 6.227 16 O -0.110 6.110 17 C -0.070 4.070 18 C -0.048 4.048 19 C -0.035 4.035 20 Cl -0.027 7.027 21 H 0.275 0.725 22 H 0.007 0.993 23 H 0.007 0.993 24 H 0.139 0.861 25 H 0.200 0.800 26 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.332 -15.625 0.002 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.591 4.591 8 H 0.090 0.910 9 C 0.132 3.868 10 O -0.218 6.218 11 C 0.083 3.917 12 C -0.180 4.180 13 C -0.097 4.097 14 N 0.546 4.454 15 O -0.426 6.426 16 O -0.342 6.342 17 C -0.089 4.089 18 C -0.067 4.067 19 C -0.063 4.063 20 Cl 0.003 6.997 21 H 0.084 0.916 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.157 0.843 25 H 0.217 0.783 26 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.212 -15.135 0.001 16.360 hybrid contribution -0.697 1.332 -0.001 1.503 sum 5.515 -13.803 0.000 14.864 Atomic orbital electron populations 1.70062 1.07795 1.29161 1.49221 1.25936 0.95919 1.03361 0.93404 0.85077 0.78749 0.76963 0.78321 1.18464 1.19683 1.19669 1.21257 0.94510 0.89543 1.53835 0.90988 1.20411 0.88412 0.82469 0.95515 1.86228 1.37816 1.11545 1.86174 1.18943 0.90096 0.87088 0.95582 1.20981 0.95072 0.97673 1.04300 1.21039 0.78961 0.96295 1.13372 1.43782 1.04166 1.00260 0.97175 1.94646 1.57502 1.33171 1.57234 1.94427 1.79801 1.10028 1.49948 1.21303 0.91840 0.99074 0.96678 1.21397 0.94157 0.95256 0.95866 1.20927 0.86631 0.92905 1.05793 1.98403 1.07401 1.97619 1.96305 0.91638 0.97476 0.97485 0.84332 0.78308 0.77176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.61 13.29 21.45 0.28 -53.32 15 2 C 0.01 0.76 5.46 84.65 0.46 1.22 15 3 Si 0.99 42.50 29.54 68.60 2.03 44.52 15 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 5 H -0.27 -11.29 7.11 99.48 0.71 -10.59 15 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 7 C -0.55 -31.07 9.43 25.60 0.24 -30.83 15 8 H 0.07 3.96 7.81 -2.91 -0.02 3.94 15 9 C 0.20 10.79 4.49 71.23 0.32 11.11 15 10 O -0.31 -13.84 9.58 -92.71 -0.89 -14.73 15 11 C 0.13 4.83 6.68 22.52 0.15 4.98 15 12 C -0.16 -5.86 8.54 22.36 0.19 -5.67 15 13 C -0.01 -0.41 6.85 36.37 0.25 -0.16 15 14 N 0.03 0.95 4.45 -46.49 -0.21 0.74 15 15 O -0.23 -8.95 18.45 18.88 0.35 -8.60 15 16 O -0.11 -3.23 18.44 18.89 0.35 -2.88 15 17 C -0.07 -1.37 9.55 22.28 0.21 -1.16 15 18 C -0.05 -0.85 9.83 22.27 0.22 -0.63 15 19 C -0.03 -0.94 6.33 22.41 0.14 -0.79 15 20 Cl -0.03 -0.69 28.50 -2.72 -0.08 -0.77 15 21 H 0.27 14.78 8.31 -92.71 -0.77 14.01 15 22 H 0.01 0.41 7.66 -2.39 -0.02 0.39 15 23 H 0.01 0.41 7.67 -2.38 -0.02 0.39 15 24 H 0.14 5.94 5.85 -2.91 -0.02 5.92 15 25 H 0.20 2.38 7.60 -2.91 -0.02 2.36 15 26 H 0.21 1.62 8.06 -2.91 -0.02 1.60 15 Total: -1.00 -64.87 263.70 5.25 -59.62 By element: Atomic # 1 Polarization: -3.89 SS G_CDS: 1.23 Total: -2.66 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 2.19 Total: -21.92 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.08 Total: -52.58 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.19 Total: -26.22 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -64.87 5.25 -59.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070089130.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.368 kcal (2) G-P(sol) polarization free energy of solvation -64.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds