Wall clock time and date at job start Mon Mar 30 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46759 * 2 1 4 4 H 1.08999 * 109.47053 * 305.43540 * 3 2 1 5 5 C 1.50693 * 109.47211 * 185.43071 * 3 2 1 6 6 H 1.07993 * 120.00809 * 240.00248 * 5 3 2 7 7 C 1.37888 * 119.99853 * 59.99865 * 5 3 2 8 8 N 1.31515 * 119.99936 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99940 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47342 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46914 * 120.00318 * 9 7 5 12 12 H 1.48508 * 109.47163 * 239.99944 * 9 7 5 13 13 S 1.81400 * 109.47219 * 65.43230 * 3 2 1 14 14 C 1.76197 * 103.00113 * 187.94661 * 13 3 2 15 15 C 1.39187 * 119.69836 * 177.42405 * 14 13 3 16 16 C 1.38276 * 119.10558 * 180.02562 * 15 14 13 17 17 C 1.38998 * 118.50071 * 0.02562 * 16 15 14 18 18 Cl 1.73603 * 120.34033 * 180.02562 * 17 16 15 19 19 C 1.38130 * 119.31854 * 0.02562 * 17 16 15 20 20 N 1.31969 * 120.84127 * 359.71784 * 19 17 16 21 21 H 1.09001 * 109.46716 * 173.79773 * 1 2 3 22 22 H 1.08995 * 109.47599 * 293.80318 * 1 2 3 23 23 H 1.09005 * 109.46687 * 53.80771 * 1 2 3 24 24 H 1.09001 * 109.46899 * 119.99395 * 2 1 3 25 25 H 1.08989 * 109.47430 * 239.99966 * 2 1 3 26 26 H 0.96992 * 120.00178 * 180.02562 * 8 7 5 27 27 H 1.07991 * 120.44708 * 359.97438 * 15 14 13 28 28 H 1.07994 * 120.74701 * 180.02562 * 16 15 14 29 29 H 1.07996 * 119.57660 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9837 -0.8373 5 6 3.5409 1.4448 -0.1345 6 1 4.1517 1.8874 0.6384 7 6 4.1345 0.8816 -1.2443 8 7 3.3907 0.3430 -2.1858 9 14 5.9950 0.8838 -1.4107 10 1 6.5972 1.5449 -0.2253 11 1 6.4856 -0.5151 -1.4993 12 1 6.3813 1.6225 -2.6397 13 16 1.5711 2.2496 1.5554 14 6 2.0215 3.9308 1.2811 15 6 1.7566 4.8842 2.2600 16 6 2.1149 6.2001 2.0317 17 6 2.7285 6.5209 0.8264 18 17 3.1987 8.1579 0.4902 19 6 2.9602 5.5239 -0.1010 20 7 2.6118 4.2753 0.1466 21 1 -0.3633 -1.0217 -0.1110 22 1 -0.3634 0.4147 0.9402 23 1 -0.3633 0.6069 -0.8294 24 1 1.8933 -0.5137 0.8901 25 1 1.8934 -0.5138 -0.8899 26 1 3.8082 -0.0535 -2.9663 27 1 1.2770 4.6002 3.1850 28 1 1.9222 6.9614 2.7731 29 1 3.4370 5.7684 -1.0386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070614905.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:00 Heat of formation + Delta-G solvation = 12.268895 kcal Electronic energy + Delta-G solvation = -14512.148874 eV Core-core repulsion = 11972.854628 eV Total energy + Delta-G solvation = -2539.294246 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.60269 -36.41685 -34.66862 -32.14923 -31.59329 -30.68170 -27.51210 -23.51313 -23.35092 -23.09489 -20.33740 -17.55891 -16.47443 -16.27976 -16.12568 -15.12165 -14.23396 -14.02674 -13.92319 -13.13942 -12.98983 -12.55365 -12.15182 -12.00324 -11.74923 -11.27482 -11.19689 -10.93240 -10.89837 -10.42143 -10.09497 -9.88301 -9.60521 -9.39698 -9.11596 -9.03586 -8.92216 -8.37390 -6.82343 -6.03462 -4.11421 1.17072 1.48699 2.14263 2.46547 3.27627 3.35731 3.38308 3.52817 3.96783 4.41578 4.85976 4.94568 5.22831 5.26229 5.31035 5.87408 6.04425 6.11224 6.12709 6.18447 6.36326 6.66092 6.80032 6.92794 6.99722 7.45206 7.68461 7.87813 8.14227 8.20452 8.84530 9.49949 10.99068 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.007475 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.815180 B = 3744.776705 C = 4806.671121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C 0.106 3.894 4 H 0.059 0.941 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 S -0.130 6.130 14 C 0.151 3.849 15 C -0.159 4.159 16 C -0.056 4.056 17 C -0.117 4.117 18 Cl -0.076 7.076 19 C 0.132 3.868 20 N -0.435 5.435 21 H 0.039 0.961 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.113 0.887 26 H 0.262 0.738 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 8.967 5.971 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.021 4.021 4 H 0.077 0.923 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 S 0.117 5.883 14 C -0.098 4.098 15 C -0.186 4.186 16 C -0.084 4.084 17 C -0.151 4.151 18 Cl -0.047 7.047 19 C -0.031 4.031 20 N -0.147 5.147 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.130 0.870 26 H 0.071 0.929 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.762 7.671 6.103 10.500 hybrid contribution 1.543 1.452 -0.675 2.224 sum -2.218 9.123 5.428 10.845 Atomic orbital electron populations 1.21899 0.98432 0.99852 1.00629 1.21566 0.92383 0.97500 1.03584 1.21144 0.99738 0.93755 0.87459 0.92297 1.21059 0.89179 1.37259 1.05540 0.92121 1.24864 0.98099 0.95089 0.95385 1.69839 1.34789 1.38927 1.09488 0.86471 0.85525 0.77596 0.78079 1.19853 1.21027 1.20967 1.84970 1.74178 0.96630 1.32565 1.23380 0.94932 0.99618 0.91847 1.21683 1.04233 0.92017 1.00715 1.21245 0.95430 0.96481 0.95232 1.21918 1.07864 0.86770 0.98528 1.98335 1.91093 1.19997 1.95322 1.22867 0.95095 0.86978 0.98140 1.68656 1.09968 1.16844 1.19231 0.94227 0.93749 0.93376 0.93920 0.86960 0.92851 0.84154 0.84264 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.64 37.16 0.36 -2.52 15 2 C -0.11 -2.50 5.24 -26.73 -0.14 -2.64 15 3 C 0.11 2.58 1.68 -27.89 -0.05 2.53 15 4 H 0.06 1.58 8.09 -51.92 -0.42 1.16 15 5 C -0.49 -13.05 7.59 -34.44 -0.26 -13.31 15 6 H 0.06 1.68 7.71 -52.49 -0.40 1.27 15 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 15 8 N -0.89 -24.48 11.29 55.43 0.63 -23.85 15 9 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 15 10 H -0.27 -6.55 7.11 56.52 0.40 -6.14 15 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 13 S -0.13 -2.68 20.19 -107.50 -2.17 -4.84 15 14 C 0.15 2.98 6.92 -16.93 -0.12 2.86 15 15 C -0.16 -2.49 9.84 -39.21 -0.39 -2.88 15 16 C -0.06 -0.78 9.97 -39.29 -0.39 -1.17 15 17 C -0.12 -1.76 6.34 -39.34 -0.25 -2.01 15 18 Cl -0.08 -0.97 28.98 -51.86 -1.50 -2.47 15 19 C 0.13 2.32 10.97 -17.53 -0.19 2.13 15 20 N -0.44 -9.17 8.63 -12.09 -0.10 -9.27 15 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.04 0.79 7.38 -51.93 -0.38 0.41 15 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.04 0.95 8.14 -51.93 -0.42 0.53 15 25 H 0.11 2.83 5.94 -51.94 -0.31 2.53 15 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 27 H 0.14 1.85 8.06 -52.49 -0.42 1.43 15 28 H 0.14 1.48 8.06 -52.49 -0.42 1.06 15 29 H 0.16 2.51 8.06 -52.49 -0.42 2.08 15 LS Contribution 279.47 15.07 4.21 4.21 Total: -1.00 -27.57 279.47 -8.67 -36.24 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -3.19 Total: -0.98 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -1.52 Total: -15.28 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.52 Total: -33.12 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.17 Total: -4.84 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.57 -8.67 -36.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070614905.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.512 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds