Wall clock time and date at job start Mon Mar 30 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46759 * 2 1 4 4 H 1.08999 * 109.47053 * 305.43540 * 3 2 1 5 5 C 1.50693 * 109.47211 * 185.43071 * 3 2 1 6 6 H 1.07993 * 120.00809 * 240.00248 * 5 3 2 7 7 C 1.37888 * 119.99853 * 59.99865 * 5 3 2 8 8 N 1.31515 * 119.99936 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99940 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47342 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46914 * 120.00318 * 9 7 5 12 12 H 1.48508 * 109.47163 * 239.99944 * 9 7 5 13 13 S 1.81400 * 109.47219 * 65.43230 * 3 2 1 14 14 C 1.76197 * 103.00113 * 187.94661 * 13 3 2 15 15 C 1.39187 * 119.69836 * 177.42405 * 14 13 3 16 16 C 1.38276 * 119.10558 * 180.02562 * 15 14 13 17 17 C 1.38998 * 118.50071 * 0.02562 * 16 15 14 18 18 Cl 1.73603 * 120.34033 * 180.02562 * 17 16 15 19 19 C 1.38130 * 119.31854 * 0.02562 * 17 16 15 20 20 N 1.31969 * 120.84127 * 359.71784 * 19 17 16 21 21 H 1.09001 * 109.46716 * 173.79773 * 1 2 3 22 22 H 1.08995 * 109.47599 * 293.80318 * 1 2 3 23 23 H 1.09005 * 109.46687 * 53.80771 * 1 2 3 24 24 H 1.09001 * 109.46899 * 119.99395 * 2 1 3 25 25 H 1.08989 * 109.47430 * 239.99966 * 2 1 3 26 26 H 0.96992 * 120.00178 * 180.02562 * 8 7 5 27 27 H 1.07991 * 120.44708 * 359.97438 * 15 14 13 28 28 H 1.07994 * 120.74701 * 180.02562 * 16 15 14 29 29 H 1.07996 * 119.57660 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9837 -0.8373 5 6 3.5409 1.4448 -0.1345 6 1 4.1517 1.8874 0.6384 7 6 4.1345 0.8816 -1.2443 8 7 3.3907 0.3430 -2.1858 9 14 5.9950 0.8838 -1.4107 10 1 6.5972 1.5449 -0.2253 11 1 6.4856 -0.5151 -1.4993 12 1 6.3813 1.6225 -2.6397 13 16 1.5711 2.2496 1.5554 14 6 2.0215 3.9308 1.2811 15 6 1.7566 4.8842 2.2600 16 6 2.1149 6.2001 2.0317 17 6 2.7285 6.5209 0.8264 18 17 3.1987 8.1579 0.4902 19 6 2.9602 5.5239 -0.1010 20 7 2.6118 4.2753 0.1466 21 1 -0.3633 -1.0217 -0.1110 22 1 -0.3634 0.4147 0.9402 23 1 -0.3633 0.6069 -0.8294 24 1 1.8933 -0.5137 0.8901 25 1 1.8934 -0.5138 -0.8899 26 1 3.8082 -0.0535 -2.9663 27 1 1.2770 4.6002 3.1850 28 1 1.9222 6.9614 2.7731 29 1 3.4370 5.7684 -1.0386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070614905.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:00 Heat of formation + Delta-G solvation = -1.921298 kcal Electronic energy + Delta-G solvation = -14512.764207 eV Core-core repulsion = 11972.854628 eV Total energy + Delta-G solvation = -2539.909579 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.93228 -37.57042 -36.55703 -33.53205 -33.43173 -32.00580 -29.38626 -25.20360 -24.77471 -24.54495 -22.11019 -18.90762 -18.50658 -17.62609 -17.47147 -16.91267 -15.96488 -15.41902 -15.37965 -14.84963 -14.37660 -13.98402 -13.76266 -13.51839 -13.18542 -13.04614 -12.81392 -12.75989 -12.30344 -12.12823 -11.82248 -11.70298 -11.20246 -10.91534 -10.86034 -10.47599 -10.37859 -10.36244 -8.43666 -8.02013 -6.21123 -0.14743 0.24586 0.78631 1.13138 1.37167 1.39755 1.49172 1.76036 2.43175 2.62974 3.17826 3.58263 3.80679 4.00409 4.04635 4.44116 4.54518 4.66808 4.69617 4.80119 4.92991 5.02586 5.26130 5.27312 5.42533 5.55437 5.72790 5.86289 6.18557 6.76437 6.85069 7.41656 8.93747 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.007475 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.815180 B = 3744.776705 C = 4806.671121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C 0.105 3.895 4 H 0.022 0.978 5 C -0.495 4.495 6 H 0.044 0.956 7 C 0.025 3.975 8 N -0.913 5.913 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.282 1.282 13 S -0.118 6.118 14 C 0.117 3.883 15 C -0.146 4.146 16 C -0.043 4.043 17 C -0.105 4.105 18 Cl -0.049 7.049 19 C 0.111 3.889 20 N -0.482 5.482 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.039 0.961 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.262 0.738 27 H 0.169 0.831 28 H 0.183 0.817 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 10.657 7.550 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C -0.023 4.023 4 H 0.040 0.960 5 C -0.534 4.534 6 H 0.062 0.938 7 C -0.175 4.175 8 N -0.553 5.553 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.202 1.202 12 H -0.208 1.208 13 S 0.127 5.873 14 C -0.132 4.132 15 C -0.173 4.173 16 C -0.071 4.071 17 C -0.138 4.138 18 Cl -0.021 7.021 19 C -0.051 4.051 20 N -0.195 5.195 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.187 0.813 28 H 0.201 0.799 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.903 9.385 7.682 12.741 hybrid contribution 1.602 1.155 -1.138 2.280 sum -2.300 10.541 6.544 12.618 Atomic orbital electron populations 1.21775 0.95603 1.01248 1.01054 1.21419 0.94900 0.96263 1.02043 1.20814 0.98197 0.94607 0.88723 0.95986 1.21149 0.90532 1.36687 1.05066 0.93781 1.25500 1.01567 0.95086 0.95317 1.69952 1.36015 1.39566 1.09805 0.85651 0.81437 0.77764 0.77664 1.20157 1.20198 1.20807 1.84537 1.75012 0.98016 1.29703 1.23479 0.97104 0.99467 0.93128 1.21981 1.02970 0.91877 1.00480 1.21709 0.93471 0.96593 0.95321 1.21979 1.06180 0.87489 0.98156 1.98352 1.90766 1.17689 1.95263 1.22997 0.96012 0.86793 0.99326 1.68460 1.11402 1.18995 1.20615 0.92016 0.92354 0.94133 0.94031 0.89853 0.92857 0.81309 0.79928 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.64 71.98 0.69 -4.60 15 2 C -0.11 -4.93 5.24 30.60 0.16 -4.77 15 3 C 0.10 5.24 1.68 29.85 0.05 5.29 15 4 H 0.02 1.25 8.09 -2.39 -0.02 1.23 15 5 C -0.49 -27.11 7.59 25.60 0.19 -26.92 15 6 H 0.04 2.51 7.71 -2.91 -0.02 2.48 15 7 C 0.03 1.39 5.29 84.66 0.45 1.84 15 8 N -0.91 -51.67 11.29 21.45 0.24 -51.43 15 9 Si 0.95 44.38 29.54 68.60 2.03 46.41 15 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 13 S -0.12 -4.88 20.19 -56.49 -1.14 -6.02 15 14 C 0.12 4.54 6.92 84.83 0.59 5.13 15 15 C -0.15 -4.19 9.84 22.51 0.22 -3.97 15 16 C -0.04 -1.04 9.97 22.46 0.22 -0.82 15 17 C -0.10 -2.89 6.34 22.43 0.14 -2.75 15 18 Cl -0.05 -1.12 28.98 -2.72 -0.08 -1.19 15 19 C 0.11 3.84 10.97 84.65 0.93 4.77 15 20 N -0.48 -20.60 8.63 -192.15 -1.66 -22.26 15 21 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 22 H 0.06 2.03 7.38 -2.39 -0.02 2.02 15 23 H 0.04 1.57 8.14 -2.38 -0.02 1.55 15 24 H 0.04 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.08 4.36 5.94 -2.39 -0.01 4.34 15 26 H 0.26 14.13 8.31 -92.71 -0.77 13.36 15 27 H 0.17 3.81 8.06 -2.92 -0.02 3.79 15 28 H 0.18 2.84 8.06 -2.91 -0.02 2.82 15 29 H 0.16 5.21 8.06 -2.91 -0.02 5.19 15 Total: -1.00 -61.18 279.47 4.19 -56.99 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.15 Total: 4.30 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 3.65 Total: -26.80 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.42 Total: -73.69 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -1.14 Total: -6.02 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.19 kcal Total: -61.18 4.19 -56.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070614905.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.071 kcal (2) G-P(sol) polarization free energy of solvation -61.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds