Wall clock time and date at job start Mon Mar 30 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09004 * 109.47193 * 54.39791 * 3 2 1 5 5 C 1.50697 * 109.47205 * 174.40265 * 3 2 1 6 6 H 1.08001 * 119.99992 * 120.00345 * 5 3 2 7 7 C 1.37879 * 120.00245 * 299.99910 * 5 3 2 8 8 N 1.31515 * 120.00115 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99728 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47034 * 90.00097 * 9 7 5 11 11 H 1.48496 * 109.47059 * 209.99904 * 9 7 5 12 12 H 1.48501 * 109.47342 * 330.00398 * 9 7 5 13 13 S 1.81400 * 109.47061 * 294.40394 * 3 2 1 14 14 C 1.76201 * 103.00183 * 172.67893 * 13 3 2 15 15 N 1.32460 * 119.71325 * 354.89230 * 14 13 3 16 16 C 1.31958 * 121.62227 * 179.72533 * 15 14 13 17 17 C 1.38053 * 120.88405 * 0.53656 * 16 15 14 18 18 C 1.38878 * 119.34527 * 359.45279 * 17 16 15 19 19 C 1.38390 * 118.50214 * 0.27309 * 18 17 16 20 20 Cl 1.73602 * 120.46112 * 180.02562 * 19 18 17 21 21 H 1.09005 * 109.47071 * 175.26655 * 1 2 3 22 22 H 1.09003 * 109.47533 * 295.26220 * 1 2 3 23 23 H 1.09000 * 109.47120 * 55.26711 * 1 2 3 24 24 H 1.08992 * 109.47210 * 239.99483 * 2 1 3 25 25 H 1.09004 * 109.46747 * 119.99753 * 2 1 3 26 26 H 0.96993 * 119.99661 * 179.97438 * 8 7 5 27 27 H 1.08001 * 119.55791 * 180.28641 * 16 15 14 28 28 H 1.07997 * 120.32783 * 179.72000 * 17 16 15 29 29 H 1.07997 * 120.74677 * 180.29499 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5970 1.9845 0.8356 5 6 3.5406 1.4447 0.1386 6 1 4.1534 1.8867 -0.6331 7 6 4.1311 0.8827 1.2505 8 7 5.4406 0.8852 1.3717 9 14 3.0710 0.1191 2.5856 10 1 2.8521 -1.3181 2.2824 11 1 3.7559 0.2495 3.8967 12 1 1.7621 0.8185 2.6391 13 16 1.5753 2.2481 -1.5575 14 6 2.0422 3.9260 -1.2905 15 7 2.4945 4.3007 -0.1033 16 6 2.8596 5.5459 0.1365 17 6 2.7721 6.5118 -0.8460 18 6 2.3035 6.1610 -2.1054 19 6 1.9331 4.8466 -2.3297 20 17 1.3411 4.3522 -3.8850 21 1 -0.3633 -1.0242 -0.0848 22 1 -0.3634 0.4386 0.9294 23 1 -0.3633 0.5855 -0.8446 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 5.8560 0.4901 2.1541 27 1 3.2280 5.8139 1.1157 28 1 3.0691 7.5291 -0.6386 29 1 2.2303 6.8973 -2.8921 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070614913.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:02 Heat of formation + Delta-G solvation = 22.245118 kcal Electronic energy + Delta-G solvation = -14725.047166 eV Core-core repulsion = 12186.185521 eV Total energy + Delta-G solvation = -2538.861645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.59001 -36.33287 -34.94265 -32.14939 -31.94951 -30.68017 -27.97772 -23.58138 -23.25613 -22.77735 -20.87905 -17.61927 -16.85460 -16.30265 -16.03175 -15.43501 -14.48944 -14.10402 -13.92315 -13.22688 -12.86842 -12.59310 -12.49528 -12.14424 -11.73183 -11.62377 -11.28209 -11.04867 -10.88376 -10.56019 -10.22124 -9.87033 -9.67982 -9.38596 -9.04592 -8.95984 -8.93093 -8.58810 -6.82978 -6.09494 -4.09427 1.20891 1.45049 2.18969 2.39014 3.22277 3.28744 3.35168 3.36895 3.98339 4.36236 4.89426 5.01310 5.18098 5.21587 5.34883 5.63624 5.79335 5.80832 5.94490 6.03191 6.21473 6.48882 6.50591 6.58334 6.72110 6.77169 7.13247 7.51045 8.19676 8.37249 8.91430 9.47723 11.02494 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023709 B = 0.008395 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.713217 B = 3334.356105 C = 4024.874079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.118 4.118 3 C 0.054 3.946 4 H 0.059 0.941 5 C -0.496 4.496 6 H 0.079 0.921 7 C 0.079 3.921 8 N -0.895 5.895 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.295 1.295 12 H -0.264 1.264 13 S -0.077 6.077 14 C 0.154 3.846 15 N -0.440 5.440 16 C 0.121 3.879 17 C -0.190 4.190 18 C -0.057 4.057 19 C -0.089 4.089 20 Cl -0.056 7.056 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.264 0.736 27 H 0.159 0.841 28 H 0.137 0.863 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 8.256 -5.028 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.158 4.158 3 C -0.075 4.075 4 H 0.077 0.923 5 C -0.535 4.535 6 H 0.097 0.903 7 C -0.124 4.124 8 N -0.533 5.533 9 Si 0.710 3.290 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.189 1.189 13 S 0.170 5.830 14 C -0.096 4.096 15 N -0.152 5.152 16 C -0.041 4.041 17 C -0.214 4.214 18 C -0.084 4.084 19 C -0.126 4.126 20 Cl -0.027 7.027 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.176 0.824 28 H 0.155 0.845 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.742 6.843 -5.334 12.316 hybrid contribution 0.247 0.791 1.157 1.423 sum -8.494 7.634 -4.177 12.161 Atomic orbital electron populations 1.21957 0.97085 1.00735 1.01807 1.21848 0.94036 0.97657 1.02214 1.21467 1.01265 0.93567 0.91211 0.92310 1.20845 0.87130 1.38515 1.07019 0.90305 1.24895 0.94731 0.95453 0.97363 1.69865 1.08940 1.45192 1.29282 0.86961 0.81038 0.79678 0.81351 1.20421 1.22251 1.18867 1.84943 1.73094 0.96215 1.28776 1.23188 0.96655 0.99257 0.90460 1.68506 1.10079 1.17862 1.18746 1.22913 0.93700 0.88002 0.99501 1.21965 1.04435 1.01347 0.93668 1.21272 0.95723 0.93751 0.97692 1.21466 1.07925 0.95100 0.88124 1.98340 1.86662 1.91553 1.26162 0.93464 0.93232 0.92076 0.91345 0.91791 0.92562 0.82414 0.84515 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.82 37.16 0.36 -2.41 15 2 C -0.12 -2.52 4.89 -26.73 -0.13 -2.65 15 3 C 0.05 1.27 1.26 -27.89 -0.04 1.23 15 4 H 0.06 1.46 7.06 -51.92 -0.37 1.09 15 5 C -0.50 -13.75 8.37 -34.44 -0.29 -14.04 15 6 H 0.08 2.44 7.96 -52.49 -0.42 2.03 15 7 C 0.08 2.24 5.45 -17.82 -0.10 2.14 15 8 N -0.89 -27.06 13.96 55.43 0.77 -26.28 15 9 Si 0.88 21.54 24.42 -169.99 -4.15 17.39 15 10 H -0.28 -6.55 6.82 56.52 0.39 -6.17 15 11 H -0.30 -7.28 7.11 56.52 0.40 -6.88 15 12 H -0.26 -6.21 6.53 56.52 0.37 -5.84 15 13 S -0.08 -1.60 18.93 -107.50 -2.03 -3.64 15 14 C 0.15 3.13 6.87 -16.90 -0.12 3.01 15 15 N -0.44 -9.23 8.78 -12.09 -0.11 -9.33 15 16 C 0.12 2.00 11.17 -17.57 -0.20 1.80 15 17 C -0.19 -2.54 10.10 -39.41 -0.40 -2.94 15 18 C -0.06 -0.79 9.97 -39.29 -0.39 -1.18 15 19 C -0.09 -1.52 6.36 -39.15 -0.25 -1.77 15 20 Cl -0.06 -0.86 27.87 -51.86 -1.45 -2.30 15 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.06 1.02 7.01 -51.93 -0.36 0.66 15 24 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 25 H 0.06 1.44 3.22 -51.93 -0.17 1.27 15 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 27 H 0.16 2.20 8.06 -52.49 -0.42 1.78 15 28 H 0.14 1.31 8.06 -52.49 -0.42 0.89 15 29 H 0.14 1.49 8.06 -52.49 -0.42 1.06 15 LS Contribution 270.82 15.07 4.08 4.08 Total: -1.00 -30.65 270.82 -7.46 -38.10 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -3.04 Total: -1.20 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.54 Total: -16.81 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.67 Total: -35.62 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.15 Total: 17.39 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.03 Total: -3.64 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.45 Total: -2.30 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.65 -7.46 -38.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070614913.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.346 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds