Wall clock time and date at job start Mon Mar 30 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47134 * 2 1 4 4 H 1.09004 * 109.47193 * 54.39791 * 3 2 1 5 5 C 1.50697 * 109.47205 * 174.40265 * 3 2 1 6 6 H 1.08001 * 119.99992 * 120.00345 * 5 3 2 7 7 C 1.37879 * 120.00245 * 299.99910 * 5 3 2 8 8 N 1.31515 * 120.00115 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99728 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47034 * 90.00097 * 9 7 5 11 11 H 1.48496 * 109.47059 * 209.99904 * 9 7 5 12 12 H 1.48501 * 109.47342 * 330.00398 * 9 7 5 13 13 S 1.81400 * 109.47061 * 294.40394 * 3 2 1 14 14 C 1.76201 * 103.00183 * 172.67893 * 13 3 2 15 15 N 1.32460 * 119.71325 * 354.89230 * 14 13 3 16 16 C 1.31958 * 121.62227 * 179.72533 * 15 14 13 17 17 C 1.38053 * 120.88405 * 0.53656 * 16 15 14 18 18 C 1.38878 * 119.34527 * 359.45279 * 17 16 15 19 19 C 1.38390 * 118.50214 * 0.27309 * 18 17 16 20 20 Cl 1.73602 * 120.46112 * 180.02562 * 19 18 17 21 21 H 1.09005 * 109.47071 * 175.26655 * 1 2 3 22 22 H 1.09003 * 109.47533 * 295.26220 * 1 2 3 23 23 H 1.09000 * 109.47120 * 55.26711 * 1 2 3 24 24 H 1.08992 * 109.47210 * 239.99483 * 2 1 3 25 25 H 1.09004 * 109.46747 * 119.99753 * 2 1 3 26 26 H 0.96993 * 119.99661 * 179.97438 * 8 7 5 27 27 H 1.08001 * 119.55791 * 180.28641 * 16 15 14 28 28 H 1.07997 * 120.32783 * 179.72000 * 17 16 15 29 29 H 1.07997 * 120.74677 * 180.29499 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5970 1.9845 0.8356 5 6 3.5406 1.4447 0.1386 6 1 4.1534 1.8867 -0.6331 7 6 4.1311 0.8827 1.2505 8 7 5.4406 0.8852 1.3717 9 14 3.0710 0.1191 2.5856 10 1 2.8521 -1.3181 2.2824 11 1 3.7559 0.2495 3.8967 12 1 1.7621 0.8185 2.6391 13 16 1.5753 2.2481 -1.5575 14 6 2.0422 3.9260 -1.2905 15 7 2.4945 4.3007 -0.1033 16 6 2.8596 5.5459 0.1365 17 6 2.7721 6.5118 -0.8460 18 6 2.3035 6.1610 -2.1054 19 6 1.9331 4.8466 -2.3297 20 17 1.3411 4.3522 -3.8850 21 1 -0.3633 -1.0242 -0.0848 22 1 -0.3634 0.4386 0.9294 23 1 -0.3633 0.5855 -0.8446 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 5.8560 0.4901 2.1541 27 1 3.2280 5.8139 1.1157 28 1 3.0691 7.5291 -0.6386 29 1 2.2303 6.8973 -2.8921 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070614913.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:02 Heat of formation + Delta-G solvation = 3.053003 kcal Electronic energy + Delta-G solvation = -14725.879399 eV Core-core repulsion = 12186.185521 eV Total energy + Delta-G solvation = -2539.693877 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.89342 -37.60416 -36.75873 -34.00003 -33.41161 -31.97707 -29.80113 -24.87708 -24.84434 -24.41655 -22.57923 -18.98178 -18.91548 -17.65107 -17.47184 -17.09528 -16.07560 -15.59653 -15.42540 -14.89155 -14.40295 -14.16051 -14.08851 -13.57642 -13.30358 -13.00847 -12.88284 -12.72792 -12.28430 -12.26149 -11.92111 -11.61138 -11.40111 -10.98759 -10.79400 -10.70001 -10.38622 -10.28911 -8.42269 -8.25890 -6.32310 -0.09087 0.22550 0.73013 1.07373 1.27183 1.34334 1.43326 1.60092 2.30418 2.68675 3.04894 3.69446 3.80807 4.03755 4.19328 4.21658 4.23526 4.37937 4.49233 4.76106 4.89788 5.00638 5.03543 5.04447 5.20456 5.41965 5.50185 5.56554 6.15917 6.65687 6.87761 7.28015 8.87281 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023709 B = 0.008395 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.713217 B = 3334.356105 C = 4024.874079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.055 3.945 4 H 0.045 0.955 5 C -0.488 4.488 6 H 0.030 0.970 7 C 0.023 3.977 8 N -0.945 5.945 9 Si 0.941 3.059 10 H -0.260 1.260 11 H -0.298 1.298 12 H -0.249 1.249 13 S -0.080 6.080 14 C 0.116 3.884 15 N -0.489 5.489 16 C 0.097 3.903 17 C -0.159 4.159 18 C -0.051 4.051 19 C -0.095 4.095 20 Cl -0.045 7.045 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.265 0.735 27 H 0.176 0.824 28 H 0.187 0.813 29 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 9.702 -5.259 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.074 4.074 4 H 0.064 0.936 5 C -0.527 4.527 6 H 0.048 0.952 7 C -0.176 4.176 8 N -0.585 5.585 9 Si 0.768 3.232 10 H -0.186 1.186 11 H -0.226 1.226 12 H -0.173 1.173 13 S 0.165 5.835 14 C -0.133 4.133 15 N -0.201 5.201 16 C -0.064 4.064 17 C -0.183 4.183 18 C -0.078 4.078 19 C -0.132 4.132 20 Cl -0.016 7.016 21 H 0.094 0.906 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.193 0.807 28 H 0.205 0.795 29 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.436 8.309 -5.581 14.460 hybrid contribution 0.844 0.586 1.110 1.512 sum -9.592 8.895 -4.472 13.825 Atomic orbital electron populations 1.21890 0.93809 1.02775 1.02313 1.21782 0.96956 0.95511 1.01546 1.21229 0.98117 0.95388 0.92700 0.93649 1.20890 0.89270 1.37058 1.05488 0.95166 1.25703 0.95807 0.96208 0.99840 1.70019 1.10974 1.47186 1.30362 0.85963 0.79690 0.79716 0.77864 1.18617 1.22559 1.17345 1.84617 1.73943 0.97858 1.27095 1.23175 0.99334 0.99008 0.91749 1.68324 1.11547 1.20490 1.19772 1.23407 0.94056 0.87495 1.01481 1.22469 1.00936 1.02689 0.92178 1.21829 0.93953 0.93042 0.99017 1.21671 1.07695 0.95894 0.87916 1.98340 1.86509 1.91668 1.25102 0.90641 0.92860 0.91480 0.91602 0.92870 0.92547 0.80703 0.79547 0.80102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.82 71.98 0.71 -4.26 15 2 C -0.12 -4.99 4.89 30.59 0.15 -4.84 15 3 C 0.05 2.63 1.26 29.85 0.04 2.66 15 4 H 0.05 2.28 7.06 -2.39 -0.02 2.26 15 5 C -0.49 -28.13 8.37 25.60 0.21 -27.92 15 6 H 0.03 1.99 7.96 -2.91 -0.02 1.96 15 7 C 0.02 1.34 5.45 84.66 0.46 1.80 15 8 N -0.95 -59.36 13.96 21.45 0.30 -59.06 15 9 Si 0.94 44.97 24.42 68.60 1.67 46.64 15 10 H -0.26 -11.65 6.82 99.48 0.68 -10.97 15 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 15 12 H -0.25 -11.22 6.53 99.48 0.65 -10.57 15 13 S -0.08 -3.40 18.93 -56.49 -1.07 -4.47 15 14 C 0.12 4.75 6.87 84.84 0.58 5.33 15 15 N -0.49 -20.73 8.78 -192.15 -1.69 -22.41 15 16 C 0.10 3.08 11.17 84.63 0.95 4.02 15 17 C -0.16 -3.68 10.10 22.38 0.23 -3.45 15 18 C -0.05 -1.25 9.97 22.46 0.22 -1.02 15 19 C -0.09 -3.09 6.36 22.55 0.14 -2.95 15 20 Cl -0.04 -1.32 27.87 -2.72 -0.08 -1.39 15 21 H 0.07 2.06 8.14 -2.38 -0.02 2.04 15 22 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 23 H 0.07 2.13 7.01 -2.39 -0.02 2.12 15 24 H 0.07 2.75 8.14 -2.39 -0.02 2.73 15 25 H 0.05 2.33 3.22 -2.38 -0.01 2.32 15 26 H 0.27 15.63 8.31 -92.71 -0.77 14.86 15 27 H 0.18 4.68 8.06 -2.91 -0.02 4.65 15 28 H 0.19 2.46 8.06 -2.91 -0.02 2.44 15 29 H 0.18 2.90 8.06 -2.91 -0.02 2.88 15 Total: -1.00 -70.35 270.82 3.90 -66.44 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.07 Total: 4.88 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 3.69 Total: -30.63 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -1.39 Total: -81.47 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.67 Total: 46.64 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.07 Total: -4.47 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.39 kcal Total: -70.35 3.90 -66.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070614913.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.496 kcal (2) G-P(sol) polarization free energy of solvation -70.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds