Wall clock time and date at job start Mon Mar 30 2020 06:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86796 * 119.99433 * 2 1 4 4 H 1.48506 * 109.47393 * 269.99568 * 3 2 1 5 5 H 1.48506 * 109.47524 * 29.99906 * 3 2 1 6 6 H 1.48501 * 109.47048 * 149.99810 * 3 2 1 7 7 C 1.39035 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00587 * 359.72810 * 7 2 1 9 9 N 1.36805 * 120.00016 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00071 * 179.73045 * 9 7 2 11 11 O 1.21777 * 119.99992 * 359.97438 * 10 9 7 12 12 C 1.46356 * 119.99688 * 180.02562 * 10 9 7 13 13 C 1.37932 * 125.96438 * 179.97438 * 12 10 9 14 14 C 1.39792 * 106.76894 * 179.97438 * 13 12 10 15 15 C 1.36602 * 107.10852 * 359.97438 * 14 13 12 16 16 C 1.47660 * 125.64934 * 179.97438 * 15 14 13 17 17 C 1.39665 * 120.15125 * 359.72157 * 16 15 14 18 18 C 1.37933 * 119.84111 * 179.78826 * 17 16 15 19 19 C 1.38372 * 120.15560 * 0.46873 * 18 17 16 20 20 C 1.38380 * 120.30952 * 359.78802 * 19 18 17 21 21 C 1.37933 * 120.15100 * 359.97438 * 20 19 18 22 22 O 1.34386 * 108.69413 * 359.73493 * 15 14 13 23 23 H 0.96995 * 120.00284 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99739 * 359.72790 * 9 7 2 25 25 H 1.07999 * 126.60904 * 359.97438 * 13 12 10 26 26 H 1.07992 * 126.44326 * 180.02562 * 14 13 12 27 27 H 1.08000 * 120.08367 * 0.02562 * 17 16 15 28 28 H 1.08007 * 119.92477 * 180.23260 * 18 17 16 29 29 H 1.08004 * 119.84836 * 179.75929 * 19 18 17 30 30 H 1.07999 * 119.92477 * 180.02562 * 20 19 18 31 31 H 1.08002 * 120.07324 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4450 2.6528 0.7000 6 1 3.5452 1.4403 0.7001 7 6 2.0091 -1.2041 0.0005 8 1 1.4692 -2.1394 0.0054 9 7 3.3771 -1.2040 0.0011 10 6 4.0510 -2.3712 0.0071 11 8 3.4422 -3.4258 0.0125 12 6 5.5146 -2.3710 0.0082 13 6 6.3247 -3.4873 0.0146 14 6 7.6449 -3.0276 0.0126 15 6 7.5950 -1.6625 0.0047 16 6 8.7627 -0.7587 0.0006 17 6 10.0566 -1.2842 0.0108 18 6 11.1428 -0.4341 0.0025 19 6 10.9528 0.9365 -0.0062 20 6 9.6735 1.4641 -0.0109 21 6 8.5782 0.6257 -0.0077 22 8 6.3072 -1.2786 -0.0042 23 1 -0.4850 0.8400 -0.0004 24 1 3.8621 -0.3639 -0.0029 25 1 6.0014 -4.5178 0.0200 26 1 8.5364 -3.6370 0.0159 27 1 10.2065 -2.3537 0.0213 28 1 12.1441 -0.8391 0.0066 29 1 11.8068 1.5976 -0.0087 30 1 9.5323 2.5348 -0.0181 31 1 7.5804 1.0388 -0.0118 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071532759.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:07 Heat of formation + Delta-G solvation = 3.251617 kcal Electronic energy + Delta-G solvation = -17610.862028 eV Core-core repulsion = 14630.856741 eV Total energy + Delta-G solvation = -2980.005286 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.22250 -39.08113 -38.15927 -34.31763 -33.07568 -32.00874 -31.87431 -31.05141 -28.47618 -25.41031 -23.36389 -22.94978 -21.20944 -20.76884 -19.59136 -18.94645 -17.67235 -16.58816 -15.95954 -15.90027 -15.15961 -14.95289 -14.29142 -13.71733 -13.67155 -13.53129 -13.18840 -12.91167 -12.83679 -12.71801 -12.62519 -12.10380 -11.47554 -11.34980 -11.17184 -10.71907 -10.18267 -9.96578 -9.82283 -9.40140 -9.14608 -8.98867 -8.42095 -7.72279 -6.57011 -3.99845 0.62884 1.22373 1.83164 2.72395 2.95988 2.97749 3.00046 3.05360 3.73894 3.92958 4.00897 4.37850 4.61742 4.77002 4.80084 4.94867 5.10344 5.15888 5.24565 5.35869 5.57103 5.65867 5.82746 5.95494 6.07010 6.13371 6.30257 6.31819 6.38491 6.71357 6.76192 7.15394 7.38798 7.89990 8.36050 8.68750 9.16456 9.57388 10.53580 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.023523 B = 0.005599 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.016264 B = 4999.500120 C = 6179.660366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.048 3.952 3 Si 0.877 3.123 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.301 4.301 8 H 0.128 0.872 9 N -0.554 5.554 10 C 0.505 3.495 11 O -0.562 6.562 12 C -0.016 4.016 13 C -0.161 4.161 14 C -0.184 4.184 15 C 0.010 3.990 16 C -0.005 4.005 17 C -0.102 4.102 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.106 4.106 22 O -0.164 6.164 23 H 0.280 0.720 24 H 0.378 0.622 25 H 0.158 0.842 26 H 0.151 0.849 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.127 3.342 -0.018 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.159 4.159 3 Si 0.702 3.298 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.189 1.189 7 C -0.430 4.430 8 H 0.145 0.855 9 N -0.190 5.190 10 C 0.293 3.707 11 O -0.447 6.447 12 C -0.070 4.070 13 C -0.182 4.182 14 C -0.203 4.203 15 C -0.041 4.041 16 C -0.005 4.005 17 C -0.120 4.120 18 C -0.135 4.135 19 C -0.140 4.140 20 C -0.134 4.134 21 C -0.125 4.125 22 O -0.059 6.059 23 H 0.091 0.909 24 H 0.211 0.789 25 H 0.176 0.824 26 H 0.169 0.831 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 20.342 3.095 -0.019 20.576 hybrid contribution 0.583 1.200 0.016 1.334 sum 20.925 4.295 -0.002 21.361 Atomic orbital electron populations 1.69601 1.05814 1.28372 1.45622 1.25143 0.95605 0.98429 0.96692 0.86672 0.80183 0.83392 0.79549 1.18993 1.19516 1.18912 1.19587 0.78951 0.97191 1.47276 0.85472 1.42224 1.07890 1.06443 1.62398 1.15925 0.81887 0.85140 0.87794 1.90759 1.65724 1.30626 1.57614 1.23319 0.92217 0.84108 1.07369 1.21904 0.91216 0.99557 1.05553 1.21603 0.98228 0.93010 1.07429 1.20480 0.82057 0.92791 1.08768 1.17823 0.89505 0.91728 1.01472 1.21067 0.90645 1.00231 1.00104 1.21023 0.98538 0.93448 1.00494 1.21249 0.97146 0.95350 1.00256 1.21099 0.92351 0.99913 1.00012 1.21369 0.99799 0.92337 0.98947 1.84077 1.15734 1.35226 1.70905 0.90944 0.78873 0.82398 0.83086 0.85365 0.85570 0.85939 0.85656 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.04 13.96 55.50 0.77 -23.27 16 2 C 0.05 1.28 5.50 -17.45 -0.10 1.18 16 3 Si 0.88 19.09 27.73 -169.99 -4.71 14.38 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.42 6.52 56.52 0.37 -5.05 16 7 C -0.30 -8.45 10.16 -15.04 -0.15 -8.61 16 8 H 0.13 3.99 7.38 -52.49 -0.39 3.61 16 9 N -0.55 -13.88 5.08 -12.27 -0.06 -13.94 16 10 C 0.50 12.51 7.73 -13.00 -0.10 12.41 16 11 O -0.56 -15.65 16.44 5.12 0.08 -15.57 16 12 C -0.02 -0.34 7.16 -36.43 -0.26 -0.60 16 13 C -0.16 -2.87 10.66 -39.11 -0.42 -3.29 16 14 C -0.18 -2.74 10.21 -39.59 -0.40 -3.15 16 15 C 0.01 0.17 7.02 -36.33 -0.25 -0.09 16 16 C -0.01 -0.07 5.87 -104.99 -0.62 -0.69 16 17 C -0.10 -1.10 9.56 -39.16 -0.37 -1.48 16 18 C -0.12 -1.06 10.03 -39.64 -0.40 -1.46 16 19 C -0.12 -1.10 10.04 -39.48 -0.40 -1.49 16 20 C -0.12 -1.19 10.03 -39.64 -0.40 -1.59 16 21 C -0.11 -1.36 9.72 -39.16 -0.38 -1.74 16 22 O -0.16 -3.10 10.13 3.60 0.04 -3.06 16 23 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.38 8.56 5.51 -40.82 -0.22 8.34 16 25 H 0.16 2.64 8.06 -52.49 -0.42 2.22 16 26 H 0.15 1.69 7.23 -52.49 -0.38 1.31 16 27 H 0.13 1.13 6.96 -52.49 -0.37 0.77 16 28 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 29 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 30 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.67 7.90 -52.49 -0.41 1.26 16 LS Contribution 283.27 15.07 4.27 4.27 Total: -1.00 -31.26 283.27 -6.49 -37.75 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -2.63 Total: 10.02 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -4.25 Total: -10.58 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.71 Total: -37.21 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.12 Total: -18.63 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.26 -6.49 -37.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071532759.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.006 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds