Wall clock time and date at job start Mon Mar 30 2020 06:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86796 * 119.99433 * 2 1 4 4 H 1.48506 * 109.47393 * 269.99568 * 3 2 1 5 5 H 1.48506 * 109.47524 * 29.99906 * 3 2 1 6 6 H 1.48501 * 109.47048 * 149.99810 * 3 2 1 7 7 C 1.39035 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00587 * 359.72810 * 7 2 1 9 9 N 1.36805 * 120.00016 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00071 * 179.73045 * 9 7 2 11 11 O 1.21777 * 119.99992 * 359.97438 * 10 9 7 12 12 C 1.46356 * 119.99688 * 180.02562 * 10 9 7 13 13 C 1.37932 * 125.96438 * 179.97438 * 12 10 9 14 14 C 1.39792 * 106.76894 * 179.97438 * 13 12 10 15 15 C 1.36602 * 107.10852 * 359.97438 * 14 13 12 16 16 C 1.47660 * 125.64934 * 179.97438 * 15 14 13 17 17 C 1.39665 * 120.15125 * 359.72157 * 16 15 14 18 18 C 1.37933 * 119.84111 * 179.78826 * 17 16 15 19 19 C 1.38372 * 120.15560 * 0.46873 * 18 17 16 20 20 C 1.38380 * 120.30952 * 359.78802 * 19 18 17 21 21 C 1.37933 * 120.15100 * 359.97438 * 20 19 18 22 22 O 1.34386 * 108.69413 * 359.73493 * 15 14 13 23 23 H 0.96995 * 120.00284 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99739 * 359.72790 * 9 7 2 25 25 H 1.07999 * 126.60904 * 359.97438 * 13 12 10 26 26 H 1.07992 * 126.44326 * 180.02562 * 14 13 12 27 27 H 1.08000 * 120.08367 * 0.02562 * 17 16 15 28 28 H 1.08007 * 119.92477 * 180.23260 * 18 17 16 29 29 H 1.08004 * 119.84836 * 179.75929 * 19 18 17 30 30 H 1.07999 * 119.92477 * 180.02562 * 20 19 18 31 31 H 1.08002 * 120.07324 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4953 2.0465 -1.4001 5 1 1.4450 2.6528 0.7000 6 1 3.5452 1.4403 0.7001 7 6 2.0091 -1.2041 0.0005 8 1 1.4692 -2.1394 0.0054 9 7 3.3771 -1.2040 0.0011 10 6 4.0510 -2.3712 0.0071 11 8 3.4422 -3.4258 0.0125 12 6 5.5146 -2.3710 0.0082 13 6 6.3247 -3.4873 0.0146 14 6 7.6449 -3.0276 0.0126 15 6 7.5950 -1.6625 0.0047 16 6 8.7627 -0.7587 0.0006 17 6 10.0566 -1.2842 0.0108 18 6 11.1428 -0.4341 0.0025 19 6 10.9528 0.9365 -0.0062 20 6 9.6735 1.4641 -0.0109 21 6 8.5782 0.6257 -0.0077 22 8 6.3072 -1.2786 -0.0042 23 1 -0.4850 0.8400 -0.0004 24 1 3.8621 -0.3639 -0.0029 25 1 6.0014 -4.5178 0.0200 26 1 8.5364 -3.6370 0.0159 27 1 10.2065 -2.3537 0.0213 28 1 12.1441 -0.8391 0.0066 29 1 11.8068 1.5976 -0.0087 30 1 9.5323 2.5348 -0.0181 31 1 7.5804 1.0388 -0.0118 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071532759.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:06 Heat of formation + Delta-G solvation = -17.232183 kcal Electronic energy + Delta-G solvation = -17611.750272 eV Core-core repulsion = 14630.856741 eV Total energy + Delta-G solvation = -2980.893531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.62209 -40.25639 -39.78940 -36.33955 -34.41028 -33.88587 -33.10989 -31.85340 -29.85162 -27.21358 -24.62557 -23.93045 -22.51404 -22.00583 -21.30513 -20.77859 -19.01644 -18.02678 -17.42356 -17.12991 -16.76111 -15.85444 -15.74011 -15.45547 -15.19773 -14.85528 -14.62295 -14.41560 -14.00762 -13.93865 -13.79064 -13.62322 -13.13834 -12.58374 -12.27859 -12.10864 -11.94646 -11.74822 -11.15586 -11.03583 -10.60097 -10.45777 -9.92031 -8.95012 -8.60164 -6.17250 -0.47394 0.45081 0.52260 1.22377 1.27242 1.34214 1.54826 1.57142 2.08615 2.15455 2.67198 2.89998 3.04178 3.46202 3.87307 3.89119 4.04908 4.11036 4.27197 4.49639 4.50626 4.62586 4.68184 4.86108 4.99721 5.09140 5.26839 5.35783 5.46682 5.55048 5.56590 5.72465 5.89363 6.00448 6.37676 6.60850 7.11633 7.60291 8.55473 Molecular weight = 257.08amu Principal moments of inertia in cm(-1) A = 0.023523 B = 0.005599 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.016264 B = 4999.500120 C = 6179.660366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.251 1.251 5 H -0.258 1.258 6 H -0.246 1.246 7 C -0.336 4.336 8 H 0.072 0.928 9 N -0.560 5.560 10 C 0.515 3.485 11 O -0.604 6.604 12 C -0.074 4.074 13 C -0.134 4.134 14 C -0.185 4.185 15 C 0.033 3.967 16 C -0.044 4.044 17 C -0.096 4.096 18 C -0.116 4.116 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.124 4.124 22 O -0.175 6.175 23 H 0.288 0.712 24 H 0.390 0.610 25 H 0.166 0.834 26 H 0.197 0.803 27 H 0.151 0.849 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.591 4.957 -0.005 27.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.199 4.199 3 Si 0.771 3.229 4 H -0.175 1.175 5 H -0.182 1.182 6 H -0.170 1.170 7 C -0.465 4.465 8 H 0.090 0.910 9 N -0.197 5.197 10 C 0.304 3.696 11 O -0.492 6.492 12 C -0.126 4.126 13 C -0.155 4.155 14 C -0.203 4.203 15 C -0.019 4.019 16 C -0.044 4.044 17 C -0.114 4.114 18 C -0.133 4.133 19 C -0.127 4.127 20 C -0.141 4.141 21 C -0.142 4.142 22 O -0.072 6.072 23 H 0.098 0.902 24 H 0.225 0.775 25 H 0.184 0.816 26 H 0.214 0.786 27 H 0.168 0.832 28 H 0.179 0.821 29 H 0.173 0.827 30 H 0.162 0.838 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 25.809 4.708 -0.005 26.235 hybrid contribution -0.718 0.633 0.009 0.957 sum 25.090 5.340 0.004 25.652 Atomic orbital electron populations 1.69728 1.07749 1.30021 1.46936 1.26038 0.96472 1.02297 0.95136 0.85542 0.79336 0.77471 0.80507 1.17535 1.18179 1.17003 1.19155 0.80440 0.95981 1.50913 0.91011 1.41993 1.06705 1.07159 1.63836 1.16486 0.83792 0.84324 0.84990 1.90708 1.67822 1.32034 1.58640 1.22429 0.90509 0.85770 1.13905 1.22258 0.92330 0.99180 1.01755 1.21999 0.98235 0.92764 1.07313 1.21335 0.81519 0.94211 1.04816 1.17995 0.89535 0.91713 1.05159 1.21403 0.89672 1.01819 0.98485 1.21484 0.99610 0.93340 0.98914 1.21735 0.97504 0.96116 0.97327 1.21378 0.92293 1.00764 0.99664 1.21463 1.00226 0.92726 0.99831 1.84026 1.16969 1.34804 1.71367 0.90237 0.77472 0.81620 0.78583 0.83175 0.82106 0.82693 0.83761 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.54 13.96 21.68 0.30 -53.24 16 2 C 0.00 0.17 5.50 84.95 0.47 0.64 16 3 Si 0.95 39.93 27.73 68.60 1.90 41.84 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 5 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.25 -9.47 6.52 99.48 0.65 -8.83 16 7 C -0.34 -20.28 10.16 84.11 0.85 -19.43 16 8 H 0.07 5.00 7.38 -2.91 -0.02 4.98 16 9 N -0.56 -29.55 5.08 -310.91 -1.58 -31.13 16 10 C 0.51 26.92 7.73 86.35 0.67 27.59 16 11 O -0.60 -35.96 16.44 -4.59 -0.08 -36.04 16 12 C -0.07 -3.11 7.16 24.31 0.17 -2.94 16 13 C -0.13 -4.65 10.66 22.57 0.24 -4.41 16 14 C -0.18 -4.95 10.21 22.26 0.23 -4.72 16 15 C 0.03 0.99 7.02 24.38 0.17 1.16 16 16 C -0.04 -1.05 5.87 -20.10 -0.12 -1.17 16 17 C -0.10 -1.61 9.56 22.54 0.22 -1.39 16 18 C -0.12 -1.43 10.03 22.23 0.22 -1.21 16 19 C -0.11 -1.38 10.04 22.34 0.22 -1.16 16 20 C -0.12 -2.08 10.03 22.23 0.22 -1.85 16 21 C -0.12 -2.90 9.72 22.54 0.22 -2.68 16 22 O -0.18 -6.59 10.13 -10.02 -0.10 -6.69 16 23 H 0.29 15.32 8.31 -92.71 -0.77 14.55 16 24 H 0.39 18.16 5.51 -92.70 -0.51 17.65 16 25 H 0.17 5.39 8.06 -2.91 -0.02 5.37 16 26 H 0.20 3.35 7.23 -2.91 -0.02 3.33 16 27 H 0.15 1.78 6.96 -2.91 -0.02 1.76 16 28 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 29 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 30 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.11 2.89 7.90 -2.91 -0.02 2.87 16 Total: -1.00 -75.12 283.27 4.84 -70.28 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.60 Total: 26.54 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 3.79 Total: -11.57 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -1.28 Total: -84.37 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.18 Total: -42.72 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 1.90 Total: 41.84 kcal Total: -75.12 4.84 -70.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071532759.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.049 kcal (2) G-P(sol) polarization free energy of solvation -75.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds