Wall clock time and date at job start Mon Mar 30 2020 06:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30539 * 1 3 3 Si 1.86800 * 120.00048 * 2 1 4 4 H 1.48498 * 109.47155 * 270.00630 * 3 2 1 5 5 H 1.48505 * 109.46899 * 30.00218 * 3 2 1 6 6 H 1.48494 * 109.47191 * 150.00394 * 3 2 1 7 7 C 1.40427 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00481 * 179.97438 * 7 2 1 9 9 C 1.39975 * 120.00032 * 359.97438 * 7 2 1 10 10 N 1.32369 * 125.13039 * 179.72338 * 9 7 2 11 11 C 1.34161 * 108.90301 * 179.86567 * 10 9 7 12 12 C 1.40379 * 133.56408 * 180.10200 * 11 10 9 13 13 C 1.36461 * 119.79437 * 180.31291 * 12 11 10 14 14 C 1.50697 * 119.67988 * 180.02562 * 13 12 11 15 15 F 1.39894 * 109.47423 * 90.00391 * 14 13 12 16 16 F 1.39908 * 109.46763 * 210.00038 * 14 13 12 17 17 F 1.39895 * 109.47268 * 329.99529 * 14 13 12 18 18 C 1.38949 * 120.63870 * 0.02562 * 13 12 11 19 19 C 1.38107 * 120.60835 * 359.97438 * 18 13 12 20 20 C 1.38493 * 119.80993 * 359.97438 * 19 18 13 21 21 O 1.35086 * 125.12987 * 0.02800 * 9 7 2 22 22 H 0.96998 * 120.00098 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.10348 * 0.28993 * 12 11 10 24 24 H 1.08005 * 119.69503 * 179.97438 * 18 13 12 25 25 H 1.07996 * 120.09950 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4868 2.0465 -1.4000 5 1 1.4368 2.6526 0.7001 6 1 3.5369 1.4402 0.6999 7 6 2.0075 -1.2161 -0.0005 8 1 3.0875 -1.2162 -0.0010 9 6 1.3077 -2.4284 -0.0005 10 7 1.8644 -3.6293 -0.0063 11 6 0.8957 -4.5574 -0.0013 12 6 0.9008 -5.9612 -0.0018 13 6 -0.2809 -6.6436 -0.0021 14 6 -0.2724 -8.1506 -0.0021 15 9 -0.2701 -8.6169 1.3168 16 9 -1.4119 -8.6233 -0.6619 17 9 0.8726 -8.6104 -0.6614 18 6 -1.4920 -5.9624 -0.0024 19 6 -1.5221 -4.5817 -0.0018 20 6 -0.3358 -3.8671 -0.0005 21 8 -0.0378 -2.5492 -0.0006 22 1 -0.4850 0.8400 0.0004 23 1 1.8371 -6.4995 -0.0024 24 1 -2.4183 -6.5179 -0.0030 25 1 -2.4681 -4.0606 -0.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074003370.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:26 Heat of formation + Delta-G solvation = -137.554328 kcal Electronic energy + Delta-G solvation = -18272.364367 eV Core-core repulsion = 14608.563442 eV Total energy + Delta-G solvation = -3663.800925 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.81561 -47.33230 -47.27707 -41.55991 -37.27064 -34.18487 -33.18973 -30.70838 -29.50933 -27.02569 -25.05664 -22.12187 -21.49793 -20.63699 -18.52341 -18.14698 -17.99840 -17.62599 -16.44042 -15.59870 -15.12915 -14.97269 -14.25713 -14.17803 -13.78884 -13.75204 -13.56191 -13.45832 -13.41692 -13.14350 -12.37583 -11.95108 -11.79490 -11.58276 -11.50963 -11.25322 -10.68251 -10.53434 -10.38885 -9.74750 -8.91070 -8.18968 -7.68640 -7.38861 -5.19845 1.64988 1.84486 2.72848 2.79920 2.87034 3.05525 3.52258 3.52924 4.02299 4.22526 4.25093 4.45129 4.79500 4.95426 5.33984 5.57068 5.77990 5.95262 6.12664 6.42861 6.53351 6.74926 6.80309 7.08397 7.18369 7.50801 7.71479 8.00894 8.14299 9.31734 9.60672 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.056722 B = 0.004918 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.519917 B = 5692.273624 C = 6011.303015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.065 3.935 3 Si 0.941 3.059 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.398 4.398 8 H 0.123 0.877 9 C 0.374 3.626 10 N -0.620 5.620 11 C 0.103 3.897 12 C -0.089 4.089 13 C -0.171 4.171 14 C 0.513 3.487 15 F -0.183 7.183 16 F -0.183 7.183 17 F -0.182 7.182 18 C -0.138 4.138 19 C -0.072 4.072 20 C -0.036 4.036 21 O -0.194 6.194 22 H 0.296 0.704 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -4.734 0.005 5.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.431 4.431 8 H 0.141 0.859 9 C 0.195 3.805 10 N -0.356 5.356 11 C -0.020 4.020 12 C -0.110 4.110 13 C -0.173 4.173 14 C 0.459 3.541 15 F -0.164 7.164 16 F -0.164 7.164 17 F -0.163 7.163 18 C -0.158 4.158 19 C -0.091 4.091 20 C -0.090 4.090 21 O -0.090 6.090 22 H 0.108 0.892 23 H 0.145 0.855 24 H 0.146 0.854 25 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.010 -4.637 0.001 5.054 hybrid contribution -0.547 0.548 0.000 0.774 sum -2.556 -4.089 0.002 4.822 Atomic orbital electron populations 1.69641 1.07994 1.31377 1.28241 1.26370 0.95259 1.02859 0.91736 0.85735 0.80204 0.77761 0.80004 1.18516 1.19441 1.17599 1.18888 0.95588 0.85474 1.43106 0.85889 1.22364 0.76022 0.93792 0.88311 1.71045 1.29413 0.97001 1.38114 1.19838 0.89904 0.94091 0.98154 1.19372 0.96629 0.90955 1.04053 1.19092 0.96058 0.89313 1.12844 1.18357 0.73044 0.89348 0.73331 1.93185 1.96167 1.90531 1.36513 1.93144 1.51646 1.90339 1.81262 1.93157 1.51184 1.90711 1.81240 1.20126 0.95876 0.92903 1.06930 1.19485 0.94694 0.92058 1.02870 1.20785 0.96852 0.84100 1.07272 1.85085 1.26473 1.21039 1.76372 0.89238 0.85541 0.85385 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.72 11.93 55.57 0.66 -17.05 15 2 C 0.06 1.45 5.50 -17.28 -0.10 1.36 15 3 Si 0.94 16.25 29.56 -169.99 -5.03 11.23 15 4 H -0.26 -4.42 7.11 56.52 0.40 -4.02 15 5 H -0.27 -4.51 7.11 56.52 0.40 -4.11 15 6 H -0.25 -4.28 7.11 56.52 0.40 -3.88 15 7 C -0.40 -9.86 9.46 -38.11 -0.36 -10.22 15 8 H 0.12 2.85 7.85 -52.49 -0.41 2.44 15 9 C 0.37 10.09 7.60 -16.67 -0.13 9.97 15 10 N -0.62 -16.68 11.35 -11.08 -0.13 -16.81 15 11 C 0.10 2.55 7.22 -84.93 -0.61 1.94 15 12 C -0.09 -1.88 9.41 -39.42 -0.37 -2.25 15 13 C -0.17 -3.20 5.42 -105.00 -0.57 -3.77 15 14 C 0.51 8.45 3.35 36.00 0.12 8.58 15 15 F -0.18 -2.97 17.30 2.25 0.04 -2.93 15 16 F -0.18 -2.83 16.43 2.25 0.04 -2.79 15 17 F -0.18 -2.99 16.41 2.25 0.04 -2.95 15 18 C -0.14 -2.48 9.38 -39.37 -0.37 -2.85 15 19 C -0.07 -1.44 10.06 -39.54 -0.40 -1.84 15 20 C -0.04 -0.89 7.43 -38.37 -0.29 -1.17 15 21 O -0.19 -5.20 9.01 1.20 0.01 -5.19 15 22 H 0.30 6.15 8.29 -40.82 -0.34 5.81 15 23 H 0.13 2.49 7.55 -52.49 -0.40 2.09 15 24 H 0.13 1.90 7.58 -52.48 -0.40 1.51 15 25 H 0.13 2.17 8.06 -52.49 -0.42 1.75 15 LS Contribution 247.49 15.07 3.73 3.73 Total: -1.00 -26.96 247.49 -4.46 -31.43 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -0.76 Total: 1.59 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -3.07 Total: -0.25 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.54 Total: -33.86 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.01 Total: -5.19 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 0.11 Total: -8.67 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -5.03 Total: 11.23 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -26.96 -4.46 -31.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074003370.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.127 kcal (2) G-P(sol) polarization free energy of solvation -26.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds