Wall clock time and date at job start Mon Mar 30 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30539 * 1 3 3 Si 1.86800 * 120.00048 * 2 1 4 4 H 1.48498 * 109.47155 * 270.00630 * 3 2 1 5 5 H 1.48505 * 109.46899 * 30.00218 * 3 2 1 6 6 H 1.48494 * 109.47191 * 150.00394 * 3 2 1 7 7 C 1.40427 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00481 * 179.97438 * 7 2 1 9 9 C 1.39975 * 120.00032 * 359.97438 * 7 2 1 10 10 N 1.32369 * 125.13039 * 179.72338 * 9 7 2 11 11 C 1.34161 * 108.90301 * 179.86567 * 10 9 7 12 12 C 1.40379 * 133.56408 * 180.10200 * 11 10 9 13 13 C 1.36461 * 119.79437 * 180.31291 * 12 11 10 14 14 C 1.50697 * 119.67988 * 180.02562 * 13 12 11 15 15 F 1.39894 * 109.47423 * 90.00391 * 14 13 12 16 16 F 1.39908 * 109.46763 * 210.00038 * 14 13 12 17 17 F 1.39895 * 109.47268 * 329.99529 * 14 13 12 18 18 C 1.38949 * 120.63870 * 0.02562 * 13 12 11 19 19 C 1.38107 * 120.60835 * 359.97438 * 18 13 12 20 20 C 1.38493 * 119.80993 * 359.97438 * 19 18 13 21 21 O 1.35086 * 125.12987 * 0.02800 * 9 7 2 22 22 H 0.96998 * 120.00098 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.10348 * 0.28993 * 12 11 10 24 24 H 1.08005 * 119.69503 * 179.97438 * 18 13 12 25 25 H 1.07996 * 120.09950 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4868 2.0465 -1.4000 5 1 1.4368 2.6526 0.7001 6 1 3.5369 1.4402 0.6999 7 6 2.0075 -1.2161 -0.0005 8 1 3.0875 -1.2162 -0.0010 9 6 1.3077 -2.4284 -0.0005 10 7 1.8644 -3.6293 -0.0063 11 6 0.8957 -4.5574 -0.0013 12 6 0.9008 -5.9612 -0.0018 13 6 -0.2809 -6.6436 -0.0021 14 6 -0.2724 -8.1506 -0.0021 15 9 -0.2701 -8.6169 1.3168 16 9 -1.4119 -8.6233 -0.6619 17 9 0.8726 -8.6104 -0.6614 18 6 -1.4920 -5.9624 -0.0024 19 6 -1.5221 -4.5817 -0.0018 20 6 -0.3358 -3.8671 -0.0005 21 8 -0.0378 -2.5492 -0.0006 22 1 -0.4850 0.8400 0.0004 23 1 1.8371 -6.4995 -0.0024 24 1 -2.4183 -6.5179 -0.0030 25 1 -2.4681 -4.0606 -0.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074003370.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:25 Heat of formation + Delta-G solvation = -154.964077 kcal Electronic energy + Delta-G solvation = -18273.119311 eV Core-core repulsion = 14608.563442 eV Total energy + Delta-G solvation = -3664.555869 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.14308 -48.64567 -48.59723 -43.38120 -38.93391 -35.93629 -35.03520 -32.33740 -31.26200 -28.75950 -26.58168 -23.83026 -23.12443 -22.44040 -20.23752 -19.46904 -19.43174 -19.13760 -18.12209 -17.29579 -17.02786 -16.58745 -15.66157 -15.54383 -15.26653 -15.12770 -15.02922 -14.83573 -14.76245 -14.66418 -13.97157 -13.56390 -13.41687 -13.29962 -13.04393 -12.84166 -12.22272 -12.17105 -12.01741 -11.35675 -10.80874 -9.90083 -9.44393 -9.07770 -7.06068 -0.02511 0.17563 1.29245 1.36924 1.57398 1.65357 1.87867 2.09482 2.31427 2.57363 2.73473 3.03518 3.07342 3.48305 3.68788 3.94750 4.17777 4.34577 4.53640 4.76248 4.82245 5.06455 5.18889 5.41068 5.49247 5.77460 5.87806 6.23293 6.28488 7.44506 7.94906 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.056722 B = 0.004918 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.519917 B = 5692.273624 C = 6011.303015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.027 3.973 3 Si 1.022 2.978 4 H -0.252 1.252 5 H -0.257 1.257 6 H -0.248 1.248 7 C -0.424 4.424 8 H 0.128 0.872 9 C 0.342 3.658 10 N -0.655 5.655 11 C 0.067 3.933 12 C -0.092 4.092 13 C -0.167 4.167 14 C 0.527 3.473 15 F -0.178 7.178 16 F -0.170 7.170 17 F -0.180 7.180 18 C -0.115 4.115 19 C -0.071 4.071 20 C -0.072 4.072 21 O -0.215 6.215 22 H 0.308 0.692 23 H 0.135 0.865 24 H 0.172 0.828 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 -5.074 -0.002 6.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.197 4.197 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.181 1.181 6 H -0.171 1.171 7 C -0.457 4.457 8 H 0.146 0.854 9 C 0.163 3.837 10 N -0.392 5.392 11 C -0.054 4.054 12 C -0.114 4.114 13 C -0.170 4.170 14 C 0.472 3.528 15 F -0.159 7.159 16 F -0.152 7.152 17 F -0.162 7.162 18 C -0.134 4.134 19 C -0.090 4.090 20 C -0.125 4.125 21 O -0.112 6.112 22 H 0.120 0.880 23 H 0.152 0.848 24 H 0.190 0.810 25 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.006 -5.039 -0.005 5.867 hybrid contribution -0.362 0.461 0.000 0.586 sum -3.368 -4.578 -0.005 5.683 Atomic orbital electron populations 1.69678 1.09706 1.33198 1.28172 1.27457 0.96005 1.05918 0.90272 0.84601 0.78733 0.72453 0.80425 1.17627 1.18059 1.17081 1.19349 0.96146 0.86194 1.43982 0.85406 1.22878 0.76491 0.94636 0.89692 1.70948 1.30650 0.97680 1.39915 1.20227 0.89950 0.95289 0.99930 1.19569 0.98198 0.89740 1.03871 1.19388 0.95556 0.90979 1.11037 1.17896 0.73450 0.87813 0.73607 1.93204 1.96173 1.90278 1.36235 1.93176 1.50946 1.90018 1.81034 1.93171 1.51237 1.90512 1.81233 1.20658 0.97249 0.92188 1.03353 1.19950 0.94390 0.92867 1.01750 1.21393 0.98337 0.83501 1.09285 1.85005 1.26494 1.22569 1.77131 0.87987 0.84754 0.81049 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.74 11.93 21.91 0.26 -37.48 15 2 C 0.03 1.22 5.50 85.42 0.47 1.69 15 3 Si 1.02 32.76 29.56 68.60 2.03 34.78 15 4 H -0.25 -7.71 7.11 99.48 0.71 -7.00 15 5 H -0.26 -7.63 7.11 99.48 0.71 -6.92 15 6 H -0.25 -7.67 7.11 99.48 0.71 -6.96 15 7 C -0.42 -21.86 9.46 23.22 0.22 -21.64 15 8 H 0.13 6.17 7.85 -2.91 -0.02 6.15 15 9 C 0.34 19.41 7.60 85.03 0.65 20.05 15 10 N -0.65 -36.99 11.35 -302.09 -3.43 -40.42 15 11 C 0.07 3.40 7.22 40.03 0.29 3.69 15 12 C -0.09 -3.89 9.41 22.38 0.21 -3.68 15 13 C -0.17 -5.89 5.42 -20.11 -0.11 -6.00 15 14 C 0.53 15.72 3.35 71.24 0.24 15.96 15 15 F -0.18 -5.23 17.30 44.97 0.78 -4.45 15 16 F -0.17 -4.60 16.43 44.97 0.74 -3.86 15 17 F -0.18 -5.50 16.41 44.97 0.74 -4.76 15 18 C -0.11 -3.76 9.38 22.41 0.21 -3.55 15 19 C -0.07 -2.73 10.06 22.30 0.22 -2.51 15 20 C -0.07 -3.60 7.43 23.05 0.17 -3.43 15 21 O -0.21 -12.06 9.01 -18.62 -0.17 -12.23 15 22 H 0.31 12.84 8.29 -92.71 -0.77 12.07 15 23 H 0.13 5.29 7.55 -2.91 -0.02 5.27 15 24 H 0.17 4.17 7.58 -2.91 -0.02 4.15 15 25 H 0.15 4.94 8.06 -2.91 -0.02 4.92 15 Total: -1.00 -60.94 247.49 4.78 -56.16 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.26 Total: 11.68 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 2.57 Total: 0.58 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -3.17 Total: -77.90 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.17 Total: -12.23 kcal Atomic # 9 Polarization: -15.32 SS G_CDS: 2.26 Total: -13.07 kcal Atomic # 14 Polarization: 32.76 SS G_CDS: 2.03 Total: 34.78 kcal Total: -60.94 4.78 -56.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074003370.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.809 kcal (2) G-P(sol) polarization free energy of solvation -60.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds