Wall clock time and date at job start Mon Mar 30 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.26848 * 299.99586 * 9 7 2 11 11 N 1.46628 * 109.27691 * 59.51194 * 9 7 2 12 12 C 1.47168 * 110.23876 * 172.78015 * 11 9 7 13 13 C 1.52894 * 108.49571 * 288.70112 * 12 11 9 14 14 C 1.50722 * 109.96395 * 50.36964 * 13 12 11 15 15 C 1.38897 * 118.46058 * 163.27382 * 14 13 12 16 16 F 1.35096 * 119.81201 * 359.84495 * 15 14 13 17 17 C 1.38232 * 120.38013 * 179.81994 * 15 14 13 18 18 C 1.38399 * 119.80164 * 0.02562 * 17 15 14 19 19 F 1.35100 * 120.08951 * 180.09663 * 18 17 15 20 20 C 1.38445 * 119.82132 * 0.07427 * 18 17 15 21 21 F 1.35102 * 119.81757 * 179.97438 * 20 18 17 22 22 C 1.37779 * 121.64589 * 343.19255 * 14 13 12 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.00898 * 111.00034 * 49.36907 * 11 9 7 25 25 H 1.08998 * 109.63474 * 48.40176 * 12 11 9 26 26 H 1.09003 * 109.63071 * 168.79745 * 12 11 9 27 27 H 1.08994 * 109.39114 * 170.52424 * 13 12 11 28 28 H 1.09002 * 109.38820 * 290.21950 * 13 12 11 29 29 H 1.07998 * 120.09976 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8716 -0.6790 -0.8906 11 7 3.9951 -0.4926 1.1934 12 6 5.4562 -0.6278 1.3063 13 6 5.7813 -2.0709 1.6930 14 6 5.0657 -3.0245 0.7709 15 6 5.4934 -4.3450 0.7226 16 9 6.5310 -4.7435 1.4906 17 6 4.8632 -5.2541 -0.1064 18 6 3.8003 -4.8458 -0.8930 19 9 3.1788 -5.7299 -1.7039 20 6 3.3752 -3.5291 -0.8465 21 9 2.3379 -3.1305 -1.6149 22 6 4.0087 -2.6159 -0.0128 23 1 -0.4850 0.8401 0.0004 24 1 3.5352 -0.8333 2.0243 25 1 5.9210 -0.3916 0.3491 26 1 5.8288 0.0525 2.0721 27 1 6.8566 -2.2324 1.6170 28 1 5.4615 -2.2514 2.7193 29 1 5.1992 -6.2800 -0.1400 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075689005.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:38 Heat of formation + Delta-G solvation = -104.155721 kcal Electronic energy + Delta-G solvation = -19476.132072 eV Core-core repulsion = 15949.612513 eV Total energy + Delta-G solvation = -3526.519558 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.06052 -48.90130 -47.96482 -39.50413 -36.11516 -33.05838 -31.32181 -30.53016 -28.55237 -25.76338 -23.66651 -22.92652 -21.27037 -20.17916 -17.89487 -17.58846 -17.08329 -16.60741 -16.01453 -15.57117 -15.32729 -14.68077 -14.47070 -14.44872 -14.36128 -14.20325 -13.65931 -13.09152 -12.93352 -12.52878 -12.52184 -12.13267 -11.76499 -11.36030 -11.03002 -10.77149 -10.58804 -10.37770 -9.91299 -9.39814 -8.64584 -8.45565 -8.14423 -7.77243 -6.10149 -4.22526 1.03112 1.13971 3.41320 3.50211 3.53354 3.66278 3.92241 4.26821 4.53332 4.58402 4.70306 4.86193 4.93956 5.16673 5.37559 5.41634 5.49715 5.66124 5.73209 5.93265 6.07130 6.13175 6.21336 6.28205 6.34783 6.66763 7.00925 7.38144 7.82300 8.03246 8.44134 8.87924 9.48246 10.98366 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.009724 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.172462 B = 2878.647029 C = 3931.397078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.086 3.914 3 Si 0.927 3.073 4 H -0.278 1.278 5 H -0.270 1.270 6 H -0.314 1.314 7 C -0.530 4.530 8 H 0.083 0.917 9 C 0.215 3.785 10 H 0.068 0.932 11 N -0.675 5.675 12 C 0.047 3.953 13 C -0.110 4.110 14 C -0.108 4.108 15 C 0.106 3.894 16 F -0.134 7.134 17 C -0.178 4.178 18 C 0.077 3.923 19 F -0.128 7.128 20 C 0.090 3.910 21 F -0.098 7.098 22 C -0.053 4.053 23 H 0.266 0.734 24 H 0.345 0.655 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.783 -6.201 1.739 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.119 4.119 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.243 1.243 7 C -0.568 4.568 8 H 0.101 0.899 9 C 0.107 3.893 10 H 0.085 0.915 11 N -0.305 5.305 12 C -0.082 4.082 13 C -0.148 4.148 14 C -0.109 4.109 15 C 0.086 3.914 16 F -0.113 7.113 17 C -0.198 4.198 18 C 0.056 3.944 19 F -0.106 7.106 20 C 0.069 3.931 21 F -0.076 7.076 22 C -0.056 4.056 23 H 0.076 0.924 24 H 0.165 0.835 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.608 -5.486 1.411 12.916 hybrid contribution 0.346 -0.539 0.161 0.661 sum 11.954 -6.025 1.572 13.478 Atomic orbital electron populations 1.69933 1.06751 1.27556 1.48292 1.24989 0.94659 0.99848 0.92420 0.86000 0.78725 0.81058 0.78375 1.20351 1.19557 1.24349 1.20898 0.86440 0.95528 1.53901 0.89882 1.18793 0.96978 0.82211 0.91292 0.91501 1.61417 1.02370 1.59228 1.07488 1.22120 0.91675 0.92735 1.01711 1.21109 0.99756 0.96119 0.97852 1.19542 0.97687 0.92989 1.00710 1.17135 0.88029 0.92358 0.93842 1.91469 1.55374 1.91138 1.73293 1.20630 0.98069 1.01287 0.99811 1.17268 0.95558 0.86362 0.95180 1.91511 1.81352 1.67246 1.70499 1.17607 0.89286 0.90607 0.95648 1.91658 1.53511 1.90604 1.71780 1.20829 0.92214 1.00098 0.92458 0.92445 0.83545 0.91135 0.90622 0.90330 0.90120 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.96 55.43 0.77 -25.64 15 2 C 0.09 2.39 5.47 -17.82 -0.10 2.30 15 3 Si 0.93 22.47 25.99 -169.99 -4.42 18.05 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.27 -6.36 6.54 56.52 0.37 -5.99 15 6 H -0.31 -7.79 7.11 56.52 0.40 -7.39 15 7 C -0.53 -14.05 7.74 -34.44 -0.27 -14.31 15 8 H 0.08 2.42 6.38 -52.49 -0.33 2.09 15 9 C 0.22 4.73 1.81 -70.20 -0.13 4.60 15 10 H 0.07 1.55 7.19 -51.93 -0.37 1.18 15 11 N -0.67 -13.24 4.12 -109.28 -0.45 -13.69 15 12 C 0.05 0.72 6.62 -3.73 -0.02 0.70 15 13 C -0.11 -1.53 5.48 -27.93 -0.15 -1.68 15 14 C -0.11 -1.78 5.78 -104.53 -0.60 -2.38 15 15 C 0.11 1.61 7.22 -39.34 -0.28 1.32 15 16 F -0.13 -1.89 16.56 2.25 0.04 -1.86 15 17 C -0.18 -2.63 10.00 -39.52 -0.40 -3.02 15 18 C 0.08 1.33 7.30 -39.45 -0.29 1.04 15 19 F -0.13 -2.19 17.18 2.25 0.04 -2.16 15 20 C 0.09 1.80 6.74 -39.25 -0.26 1.53 15 21 F -0.10 -2.24 14.22 2.25 0.03 -2.21 15 22 C -0.05 -1.03 5.47 -104.57 -0.57 -1.60 15 23 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 24 H 0.35 6.71 8.55 -39.29 -0.34 6.38 15 25 H 0.07 1.08 8.05 -51.93 -0.42 0.66 15 26 H 0.08 1.00 8.14 -51.93 -0.42 0.57 15 27 H 0.08 0.96 7.94 -51.93 -0.41 0.54 15 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 29 H 0.15 1.77 8.06 -52.49 -0.42 1.34 15 LS Contribution 253.16 15.07 3.82 3.82 Total: -1.00 -28.74 253.16 -5.56 -34.30 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -2.31 Total: 0.90 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -3.08 Total: -11.52 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.32 Total: -39.33 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.11 Total: -6.22 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.42 Total: 18.05 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.74 -5.56 -34.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075689005.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.860 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds