Wall clock time and date at job start Mon Mar 30 2020 06:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48505 * 109.47281 * 270.00389 * 3 2 1 5 5 H 1.48500 * 109.47021 * 30.00118 * 3 2 1 6 6 H 1.48498 * 109.47408 * 150.00381 * 3 2 1 7 7 C 1.37879 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00087 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.29846 * 60.42062 * 9 7 2 11 11 N 1.46958 * 109.10108 * 301.07066 * 9 7 2 12 12 C 1.47161 * 110.05862 * 187.34142 * 11 9 7 13 13 C 1.52885 * 108.68452 * 71.10144 * 12 11 9 14 14 C 1.50740 * 109.97509 * 309.55163 * 13 12 11 15 15 C 1.38680 * 118.43974 * 196.84872 * 14 13 12 16 16 C 1.38214 * 120.41454 * 180.19548 * 15 14 13 17 17 F 1.35105 * 120.10956 * 180.02562 * 16 15 14 18 18 C 1.38618 * 119.78544 * 0.03424 * 16 15 14 19 19 F 1.35096 * 120.11793 * 179.97438 * 18 16 15 20 20 C 1.38377 * 119.76945 * 359.91116 * 18 16 15 21 21 F 1.35101 * 119.82901 * 180.02562 * 20 18 16 22 22 C 1.37830 * 121.64586 * 16.91190 * 14 13 12 23 23 H 0.97000 * 120.00508 * 359.97438 * 1 2 3 24 24 H 1.00896 * 111.29957 * 63.84730 * 11 9 7 25 25 H 1.09002 * 109.62821 * 311.29182 * 12 11 9 26 26 H 1.09005 * 109.62699 * 190.90718 * 12 11 9 27 27 H 1.08998 * 109.39230 * 69.70406 * 13 12 11 28 28 H 1.08999 * 109.38728 * 189.39908 * 13 12 11 29 29 H 1.08004 * 119.78915 * 0.17499 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6308 -2.5570 -0.8950 11 7 0.3904 -2.5575 1.1892 12 6 -0.2215 -3.8909 1.3046 13 6 0.8615 -4.8941 1.7020 14 6 2.0507 -4.7580 0.7858 15 6 2.9756 -5.7906 0.7463 16 6 4.0832 -5.7067 -0.0762 17 9 4.9801 -6.7166 -0.1103 18 6 4.2710 -4.5831 -0.8660 19 9 5.3515 -4.4939 -1.6720 20 6 3.3471 -3.5537 -0.8269 21 9 3.5287 -2.4582 -1.5965 22 6 2.2333 -3.6412 -0.0011 23 1 -0.4851 0.8400 0.0004 24 1 -0.3151 -1.8366 1.1669 25 1 -0.6541 -4.1794 0.3465 26 1 -1.0003 -3.8716 2.0670 27 1 1.1725 -4.7030 2.7291 28 1 0.4622 -5.9056 1.6287 29 1 2.8296 -6.6656 1.3623 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075689964.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:35 Heat of formation + Delta-G solvation = -106.624460 kcal Electronic energy + Delta-G solvation = -19355.107951 eV Core-core repulsion = 15828.481340 eV Total energy + Delta-G solvation = -3526.626611 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.27709 -48.59909 -47.85817 -39.28327 -35.64798 -33.13158 -31.24446 -30.00012 -28.48313 -25.68919 -23.30026 -22.91113 -21.57947 -19.49007 -17.81018 -17.43808 -16.71015 -16.45248 -16.12094 -15.58465 -15.01933 -14.85038 -14.40789 -14.26343 -14.13358 -13.83805 -13.71953 -13.25169 -12.78696 -12.44725 -12.17373 -11.94104 -11.39728 -11.26036 -10.97125 -10.68500 -10.65020 -10.44633 -9.77976 -9.41058 -8.67128 -8.32583 -8.15466 -7.13457 -6.21859 -4.22887 1.17640 1.27105 3.27336 3.33643 3.38879 3.59453 3.85740 4.35553 4.52033 4.77052 4.82443 4.95988 5.08180 5.35541 5.53051 5.65782 5.77389 5.88096 6.01812 6.10763 6.27795 6.32373 6.46523 6.49378 6.71736 7.03503 7.12027 7.77651 7.87533 8.35645 8.80171 8.84316 9.44574 10.89622 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.008866 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.376249 B = 3157.307466 C = 4191.224093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.502 4.502 8 H 0.068 0.932 9 C 0.247 3.753 10 H 0.022 0.978 11 N -0.673 5.673 12 C 0.043 3.957 13 C -0.070 4.070 14 C -0.037 4.037 15 C -0.146 4.146 16 C 0.073 3.927 17 F -0.132 7.132 18 C 0.013 3.987 19 F -0.128 7.128 20 C 0.114 3.886 21 F -0.102 7.102 22 C -0.053 4.053 23 H 0.266 0.734 24 H 0.371 0.629 25 H 0.021 0.979 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 -9.685 1.722 9.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.541 4.541 8 H 0.086 0.914 9 C 0.140 3.860 10 H 0.039 0.961 11 N -0.311 5.311 12 C -0.087 4.087 13 C -0.107 4.107 14 C -0.037 4.037 15 C -0.165 4.165 16 C 0.053 3.947 17 F -0.111 7.111 18 C -0.008 4.008 19 F -0.107 7.107 20 C 0.093 3.907 21 F -0.079 7.079 22 C -0.055 4.055 23 H 0.076 0.924 24 H 0.197 0.803 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.028 -9.659 2.090 10.088 hybrid contribution 0.305 0.894 -1.028 1.396 sum 2.333 -8.765 1.061 9.132 Atomic orbital electron populations 1.69612 1.06059 1.27398 1.51007 1.24909 0.94910 0.99415 0.93770 0.86399 0.79845 0.82485 0.78185 1.20562 1.21101 1.19706 1.21130 0.93396 0.88923 1.50624 0.91352 1.18045 0.89162 0.89543 0.89272 0.96066 1.61134 1.25460 1.02322 1.42206 1.21940 0.95010 0.92828 0.98939 1.20556 0.92746 0.99132 0.98305 1.19430 0.96367 0.91524 0.96420 1.20942 0.93597 1.01233 1.00735 1.17099 0.90967 0.85591 1.01018 1.91487 1.66267 1.57702 1.95636 1.17540 0.88438 0.96522 0.98349 1.91485 1.51848 1.96400 1.70926 1.17298 0.94826 0.83704 0.94852 1.91604 1.94650 1.49742 1.71950 1.20437 0.95251 0.96759 0.93061 0.92394 0.80349 0.96052 0.91603 0.89621 0.90940 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.99 11.45 55.43 0.63 -23.35 15 2 C 0.07 1.90 5.37 -17.82 -0.10 1.80 15 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.50 -13.29 7.33 -34.44 -0.25 -13.54 15 8 H 0.07 1.85 6.11 -52.48 -0.32 1.53 15 9 C 0.25 5.92 2.39 -70.02 -0.17 5.75 15 10 H 0.02 0.58 8.14 -51.93 -0.42 0.15 15 11 N -0.67 -14.93 6.44 -109.05 -0.70 -15.63 15 12 C 0.04 0.75 6.57 -3.74 -0.02 0.73 15 13 C -0.07 -1.04 5.95 -27.92 -0.17 -1.21 15 14 C -0.04 -0.63 5.77 -104.59 -0.60 -1.24 15 15 C -0.15 -2.21 9.63 -39.43 -0.38 -2.59 15 16 C 0.07 1.23 7.30 -39.45 -0.29 0.94 15 17 F -0.13 -2.13 17.19 2.25 0.04 -2.09 15 18 C 0.01 0.24 7.31 -39.39 -0.29 -0.05 15 19 F -0.13 -2.43 17.10 2.25 0.04 -2.39 15 20 C 0.11 2.39 6.74 -39.27 -0.26 2.13 15 21 F -0.10 -2.32 14.21 2.25 0.03 -2.29 15 22 C -0.05 -1.12 5.47 -104.54 -0.57 -1.69 15 23 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 24 H 0.37 8.85 6.81 -39.29 -0.27 8.58 15 25 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 15 26 H 0.07 1.00 8.14 -51.93 -0.42 0.57 15 27 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 29 H 0.14 1.67 8.06 -52.48 -0.42 1.24 15 LS Contribution 256.97 15.07 3.87 3.87 Total: -1.00 -26.87 256.97 -6.46 -33.33 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -2.25 Total: 1.52 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.10 Total: -8.96 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: -0.07 Total: -38.98 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.11 Total: -6.77 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.87 -6.46 -33.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075689964.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.290 kcal (2) G-P(sol) polarization free energy of solvation -26.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds