Wall clock time and date at job start Mon Mar 30 2020 06:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48505 * 109.47281 * 270.00389 * 3 2 1 5 5 H 1.48500 * 109.47021 * 30.00118 * 3 2 1 6 6 H 1.48498 * 109.47408 * 150.00381 * 3 2 1 7 7 C 1.37879 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99966 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00087 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.29846 * 60.42062 * 9 7 2 11 11 N 1.46958 * 109.10108 * 301.07066 * 9 7 2 12 12 C 1.47161 * 110.05862 * 187.34142 * 11 9 7 13 13 C 1.52885 * 108.68452 * 71.10144 * 12 11 9 14 14 C 1.50740 * 109.97509 * 309.55163 * 13 12 11 15 15 C 1.38680 * 118.43974 * 196.84872 * 14 13 12 16 16 C 1.38214 * 120.41454 * 180.19548 * 15 14 13 17 17 F 1.35105 * 120.10956 * 180.02562 * 16 15 14 18 18 C 1.38618 * 119.78544 * 0.03424 * 16 15 14 19 19 F 1.35096 * 120.11793 * 179.97438 * 18 16 15 20 20 C 1.38377 * 119.76945 * 359.91116 * 18 16 15 21 21 F 1.35101 * 119.82901 * 180.02562 * 20 18 16 22 22 C 1.37830 * 121.64586 * 16.91190 * 14 13 12 23 23 H 0.97000 * 120.00508 * 359.97438 * 1 2 3 24 24 H 1.00896 * 111.29957 * 63.84730 * 11 9 7 25 25 H 1.09002 * 109.62821 * 311.29182 * 12 11 9 26 26 H 1.09005 * 109.62699 * 190.90718 * 12 11 9 27 27 H 1.08998 * 109.39230 * 69.70406 * 13 12 11 28 28 H 1.08999 * 109.38728 * 189.39908 * 13 12 11 29 29 H 1.08004 * 119.78915 * 0.17499 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6308 -2.5570 -0.8950 11 7 0.3904 -2.5575 1.1892 12 6 -0.2215 -3.8909 1.3046 13 6 0.8615 -4.8941 1.7020 14 6 2.0507 -4.7580 0.7858 15 6 2.9756 -5.7906 0.7463 16 6 4.0832 -5.7067 -0.0762 17 9 4.9801 -6.7166 -0.1103 18 6 4.2710 -4.5831 -0.8660 19 9 5.3515 -4.4939 -1.6720 20 6 3.3471 -3.5537 -0.8269 21 9 3.5287 -2.4582 -1.5965 22 6 2.2333 -3.6412 -0.0011 23 1 -0.4851 0.8400 0.0004 24 1 -0.3151 -1.8366 1.1669 25 1 -0.6541 -4.1794 0.3465 26 1 -1.0003 -3.8716 2.0670 27 1 1.1725 -4.7030 2.7291 28 1 0.4622 -5.9056 1.6287 29 1 2.8296 -6.6656 1.3623 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075689964.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:35 Heat of formation + Delta-G solvation = -122.969014 kcal Electronic energy + Delta-G solvation = -19355.816704 eV Core-core repulsion = 15828.481340 eV Total energy + Delta-G solvation = -3527.335364 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.73012 -50.08029 -49.40304 -40.73774 -37.21903 -34.86906 -32.90015 -31.49128 -29.98493 -27.46048 -24.89240 -24.34887 -23.14794 -20.95325 -19.39212 -18.92437 -18.40460 -17.98038 -17.65575 -17.18767 -16.60200 -16.32440 -16.01144 -15.85352 -15.59706 -15.40614 -15.17657 -14.83168 -14.44904 -14.02027 -13.71911 -13.36655 -12.99320 -12.84457 -12.77433 -12.38288 -12.06759 -12.01930 -11.50333 -11.20938 -10.67154 -9.78062 -9.60870 -8.86635 -8.21660 -6.28375 -0.25481 -0.15314 1.39818 1.41533 1.51442 2.16138 2.41652 2.43685 3.03408 3.15180 3.32155 3.48568 3.57863 3.99089 4.00249 4.38103 4.42245 4.51450 4.71304 4.78353 4.88916 4.92722 5.03205 5.11720 5.30077 5.36981 5.65662 5.73738 6.04068 6.52480 6.85975 7.03244 7.41139 8.88283 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.008866 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.376249 B = 3157.307466 C = 4191.224093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.030 3.970 3 Si 0.954 3.046 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.253 3.747 10 H -0.020 1.020 11 N -0.684 5.684 12 C 0.037 3.963 13 C -0.065 4.065 14 C -0.031 4.031 15 C -0.117 4.117 16 C 0.086 3.914 17 F -0.123 7.123 18 C 0.003 3.997 19 F -0.133 7.133 20 C 0.086 3.914 21 F -0.126 7.126 22 C -0.082 4.082 23 H 0.268 0.732 24 H 0.357 0.643 25 H 0.015 0.985 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.659 -11.999 3.461 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.170 4.170 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.144 3.856 10 H -0.003 1.003 11 N -0.319 5.319 12 C -0.093 4.093 13 C -0.102 4.102 14 C -0.032 4.032 15 C -0.135 4.135 16 C 0.066 3.934 17 F -0.102 7.102 18 C -0.018 4.018 19 F -0.112 7.112 20 C 0.065 3.935 21 F -0.104 7.104 22 C -0.084 4.084 23 H 0.077 0.923 24 H 0.179 0.821 25 H 0.033 0.967 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.139 0.861 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.094 -11.993 3.833 12.763 hybrid contribution 0.285 1.510 -1.566 2.194 sum 2.379 -10.483 2.267 10.986 Atomic orbital electron populations 1.69701 1.06742 1.27900 1.51459 1.25547 0.95723 1.01923 0.93799 0.85612 0.78725 0.79631 0.77989 1.20609 1.20070 1.19999 1.21347 0.92977 0.90803 1.50623 0.92861 1.17720 0.89434 0.90033 0.88385 1.00303 1.61051 1.25502 1.04503 1.40843 1.22160 0.96647 0.90871 0.99580 1.20697 0.90740 1.00725 0.98043 1.19786 0.97620 0.90426 0.95380 1.21340 0.91247 1.01596 0.99320 1.17180 0.91355 0.84714 1.00194 1.91521 1.66105 1.57033 1.95495 1.17648 0.88090 0.97010 0.99093 1.91464 1.51982 1.96497 1.71261 1.17584 0.96157 0.83984 0.95755 1.91523 1.94925 1.51179 1.72772 1.20318 0.95121 0.97592 0.95383 0.92307 0.82066 0.96698 0.89027 0.88089 0.86093 0.78791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.27 11.45 21.45 0.25 -50.02 15 2 C 0.03 1.62 5.37 84.66 0.45 2.08 15 3 Si 0.95 44.10 29.54 68.60 2.03 46.12 15 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 7 C -0.52 -28.59 7.33 25.60 0.19 -28.40 15 8 H 0.05 3.02 6.11 -2.91 -0.02 3.00 15 9 C 0.25 12.51 2.39 43.39 0.10 12.61 15 10 H -0.02 -1.12 8.14 -2.38 -0.02 -1.13 15 11 N -0.68 -30.45 6.44 -498.91 -3.21 -33.66 15 12 C 0.04 1.21 6.57 86.21 0.57 1.78 15 13 C -0.07 -1.65 5.95 29.82 0.18 -1.47 15 14 C -0.03 -0.99 5.77 -19.84 -0.11 -1.10 15 15 C -0.12 -2.96 9.63 22.37 0.22 -2.74 15 16 C 0.09 2.61 7.30 22.35 0.16 2.77 15 17 F -0.12 -3.49 17.19 44.97 0.77 -2.72 15 18 C 0.00 0.10 7.31 22.39 0.16 0.26 15 19 F -0.13 -5.07 17.10 44.97 0.77 -4.30 15 20 C 0.09 3.69 6.74 22.47 0.15 3.84 15 21 F -0.13 -6.10 14.21 44.97 0.64 -5.46 15 22 C -0.08 -3.46 5.47 -19.81 -0.11 -3.57 15 23 H 0.27 13.93 8.31 -92.71 -0.77 13.16 15 24 H 0.36 17.39 6.81 -89.70 -0.61 16.78 15 25 H 0.01 0.50 8.05 -2.39 -0.02 0.48 15 26 H 0.09 2.50 8.14 -2.38 -0.02 2.48 15 27 H 0.10 2.36 8.14 -2.39 -0.02 2.34 15 28 H 0.12 1.99 8.14 -2.39 -0.02 1.97 15 29 H 0.19 3.01 8.06 -2.91 -0.02 2.99 15 Total: -1.00 -61.36 256.97 3.80 -57.55 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 0.60 Total: 6.43 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 1.96 Total: -13.95 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -2.97 Total: -83.68 kcal Atomic # 9 Polarization: -14.66 SS G_CDS: 2.18 Total: -12.48 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -61.36 3.80 -57.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075689964.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.415 kcal (2) G-P(sol) polarization free energy of solvation -61.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds