Wall clock time and date at job start Mon Mar 30 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00186 * 2 1 4 4 H 1.48504 * 109.46838 * 239.99810 * 3 2 1 5 5 H 1.48498 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47062 * 120.00355 * 3 2 1 7 7 C 1.37882 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99953 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99741 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.26653 * 59.50313 * 9 7 2 11 11 N 1.46623 * 109.26654 * 299.99747 * 9 7 2 12 12 C 1.47157 * 110.26482 * 187.24523 * 11 9 7 13 13 C 1.52899 * 108.49650 * 71.25466 * 12 11 9 14 14 C 1.50730 * 109.94995 * 309.55154 * 13 12 11 15 15 C 1.38880 * 118.43812 * 196.77120 * 14 13 12 16 16 F 1.35100 * 119.84505 * 0.42358 * 15 14 13 17 17 C 1.38391 * 120.31565 * 180.40304 * 15 14 13 18 18 F 1.35101 * 120.13433 * 180.02562 * 17 15 14 19 19 C 1.38629 * 119.73005 * 359.97438 * 17 15 14 20 20 F 1.35098 * 120.08749 * 179.90426 * 19 17 15 21 21 C 1.38206 * 119.82143 * 359.90922 * 19 17 15 22 22 C 1.37837 * 121.66413 * 17.01141 * 14 13 12 23 23 H 0.97003 * 119.99707 * 0.02562 * 1 2 3 24 24 H 1.00901 * 111.00208 * 310.67406 * 11 9 7 25 25 H 1.08998 * 109.63792 * 190.95806 * 12 11 9 26 26 H 1.08999 * 109.63278 * 311.55287 * 12 11 9 27 27 H 1.08998 * 109.38713 * 189.40302 * 13 12 11 28 28 H 1.08993 * 109.39102 * 69.69799 * 13 12 11 29 29 H 1.08001 * 119.77620 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6185 -2.5501 -0.8846 11 7 0.4101 -2.5713 1.2008 12 6 -0.2025 -3.9044 1.3143 13 6 0.8876 -4.9089 1.6892 14 6 2.0630 -4.7641 0.7567 15 6 2.9911 -5.7956 0.6974 16 9 2.8207 -6.8979 1.4596 17 6 4.0894 -5.6997 -0.1391 18 9 4.9897 -6.7055 -0.1943 19 6 4.2614 -4.5680 -0.9209 20 9 5.3320 -4.4660 -1.7386 21 6 3.3349 -3.5442 -0.8615 22 6 2.2336 -3.6406 -0.0233 23 1 -0.4850 0.8401 -0.0004 24 1 0.9409 -2.3456 2.0287 25 1 -0.9695 -3.8904 2.0887 26 1 -0.6471 -4.1857 0.3597 27 1 0.4887 -5.9205 1.6143 28 1 1.2130 -4.7245 2.7129 29 1 3.4694 -2.6630 -1.4712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075692733.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:32 Heat of formation + Delta-G solvation = -110.673691 kcal Electronic energy + Delta-G solvation = -19146.193199 eV Core-core repulsion = 15619.391001 eV Total energy + Delta-G solvation = -3526.802199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.43250 -48.86153 -48.12618 -39.48562 -35.69739 -33.26909 -31.26617 -29.90914 -28.44527 -25.58107 -23.33863 -23.09653 -21.53184 -19.95978 -17.77279 -17.61571 -16.89810 -16.66714 -16.38214 -15.42581 -15.20350 -14.94159 -14.64456 -14.51143 -14.12886 -13.95255 -13.57593 -13.42138 -12.90261 -12.42937 -12.22057 -11.92167 -11.48377 -11.24772 -11.03409 -10.80428 -10.70992 -10.46886 -10.05180 -9.35576 -8.65048 -8.42805 -8.15185 -7.23445 -6.09069 -4.26777 1.12696 1.15143 3.25436 3.31266 3.33380 3.55328 3.72299 4.32114 4.45335 4.54219 4.76145 5.04383 5.09303 5.23578 5.42203 5.52879 5.76080 5.80909 5.94441 6.21196 6.27694 6.29216 6.38804 6.51246 6.69278 7.05750 7.12744 7.68782 7.88146 8.28970 8.64271 8.84659 9.43768 10.94626 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.007927 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.216763 B = 3531.441428 C = 4545.282193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.087 3.913 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.251 3.749 10 H 0.067 0.933 11 N -0.640 5.640 12 C 0.051 3.949 13 C -0.114 4.114 14 C -0.109 4.109 15 C 0.086 3.914 16 F -0.129 7.129 17 C 0.006 3.994 18 F -0.130 7.130 19 C 0.083 3.917 20 F -0.129 7.129 21 C -0.116 4.116 22 C -0.026 4.026 23 H 0.261 0.739 24 H 0.331 0.669 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -7.943 1.003 8.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.122 4.122 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.142 3.858 10 H 0.084 0.916 11 N -0.267 5.267 12 C -0.079 4.079 13 C -0.153 4.153 14 C -0.110 4.110 15 C 0.066 3.934 16 F -0.107 7.107 17 C -0.014 4.014 18 F -0.109 7.109 19 C 0.063 3.937 20 F -0.108 7.108 21 C -0.135 4.135 22 C -0.029 4.029 23 H 0.071 0.929 24 H 0.149 0.851 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.017 -7.592 0.704 7.887 hybrid contribution 1.800 -0.230 0.300 1.839 sum 3.817 -7.822 1.004 8.762 Atomic orbital electron populations 1.70083 1.05705 1.26479 1.45198 1.24954 0.94711 0.98823 0.93720 0.86736 0.79730 0.83191 0.78773 1.20137 1.21203 1.20174 1.20907 0.92468 0.89069 1.56150 0.91983 1.18371 0.87270 0.88406 0.91708 0.91551 1.61306 1.37336 1.22205 1.05833 1.22136 0.95340 0.89213 1.01240 1.21226 0.94584 1.02082 0.97451 1.19726 0.97138 0.92974 1.01198 1.17331 0.95667 0.85833 0.94590 1.91473 1.95150 1.50701 1.73386 1.17369 0.91649 0.88239 1.04191 1.91481 1.65532 1.58131 1.95729 1.17457 0.87738 0.94829 0.93662 1.91502 1.53060 1.96210 1.69983 1.21409 0.92915 0.97990 1.01207 1.21328 0.95899 0.95342 0.90298 0.92911 0.85142 0.91221 0.91457 0.90874 0.90512 0.82110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.13 12.76 55.43 0.71 -21.42 15 2 C 0.09 2.16 5.39 -17.82 -0.10 2.07 15 3 Si 0.89 19.54 29.54 -169.99 -5.02 14.52 15 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 15 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.55 -13.19 7.81 -34.44 -0.27 -13.46 15 8 H 0.06 1.47 6.74 -52.49 -0.35 1.12 15 9 C 0.25 5.48 2.38 -70.19 -0.17 5.31 15 10 H 0.07 1.61 8.14 -51.93 -0.42 1.19 15 11 N -0.64 -13.31 5.94 -109.28 -0.65 -13.96 15 12 C 0.05 0.86 6.62 -3.74 -0.02 0.84 15 13 C -0.11 -1.77 5.48 -27.92 -0.15 -1.92 15 14 C -0.11 -1.91 5.78 -104.52 -0.60 -2.51 15 15 C 0.09 1.49 7.23 -39.29 -0.28 1.20 15 16 F -0.13 -2.15 16.47 2.25 0.04 -2.11 15 17 C 0.01 0.11 7.31 -39.38 -0.29 -0.17 15 18 F -0.13 -2.29 17.10 2.25 0.04 -2.25 15 19 C 0.08 1.47 7.30 -39.45 -0.29 1.18 15 20 F -0.13 -2.23 17.19 2.25 0.04 -2.20 15 21 C -0.12 -2.11 8.70 -39.41 -0.34 -2.46 15 22 C -0.03 -0.49 5.47 -104.62 -0.57 -1.07 15 23 H 0.26 6.64 8.31 -40.82 -0.34 6.30 15 24 H 0.33 6.87 8.55 -39.29 -0.34 6.53 15 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.07 1.15 8.05 -51.93 -0.42 0.73 15 27 H 0.07 1.02 7.93 -51.93 -0.41 0.61 15 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 15 29 H 0.16 2.91 7.09 -52.49 -0.37 2.54 15 LS Contribution 260.89 15.07 3.93 3.93 Total: -1.00 -25.09 260.89 -6.30 -31.39 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -2.29 Total: 3.08 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -3.09 Total: -10.98 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.06 Total: -35.38 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.11 Total: -6.56 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -25.09 -6.30 -31.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075692733.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.283 kcal (2) G-P(sol) polarization free energy of solvation -25.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds