Wall clock time and date at job start Mon Mar 30 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00186 * 2 1 4 4 H 1.48504 * 109.46838 * 239.99810 * 3 2 1 5 5 H 1.48498 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47062 * 120.00355 * 3 2 1 7 7 C 1.37882 * 119.99667 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99953 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99741 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.26653 * 59.50313 * 9 7 2 11 11 N 1.46623 * 109.26654 * 299.99747 * 9 7 2 12 12 C 1.47157 * 110.26482 * 187.24523 * 11 9 7 13 13 C 1.52899 * 108.49650 * 71.25466 * 12 11 9 14 14 C 1.50730 * 109.94995 * 309.55154 * 13 12 11 15 15 C 1.38880 * 118.43812 * 196.77120 * 14 13 12 16 16 F 1.35100 * 119.84505 * 0.42358 * 15 14 13 17 17 C 1.38391 * 120.31565 * 180.40304 * 15 14 13 18 18 F 1.35101 * 120.13433 * 180.02562 * 17 15 14 19 19 C 1.38629 * 119.73005 * 359.97438 * 17 15 14 20 20 F 1.35098 * 120.08749 * 179.90426 * 19 17 15 21 21 C 1.38206 * 119.82143 * 359.90922 * 19 17 15 22 22 C 1.37837 * 121.66413 * 17.01141 * 14 13 12 23 23 H 0.97003 * 119.99707 * 0.02562 * 1 2 3 24 24 H 1.00901 * 111.00208 * 310.67406 * 11 9 7 25 25 H 1.08998 * 109.63792 * 190.95806 * 12 11 9 26 26 H 1.08999 * 109.63278 * 311.55287 * 12 11 9 27 27 H 1.08998 * 109.38713 * 189.40302 * 13 12 11 28 28 H 1.08993 * 109.39102 * 69.69799 * 13 12 11 29 29 H 1.08001 * 119.77620 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6185 -2.5501 -0.8846 11 7 0.4101 -2.5713 1.2008 12 6 -0.2025 -3.9044 1.3143 13 6 0.8876 -4.9089 1.6892 14 6 2.0630 -4.7641 0.7567 15 6 2.9911 -5.7956 0.6974 16 9 2.8207 -6.8979 1.4596 17 6 4.0894 -5.6997 -0.1391 18 9 4.9897 -6.7055 -0.1943 19 6 4.2614 -4.5680 -0.9209 20 9 5.3320 -4.4660 -1.7386 21 6 3.3349 -3.5442 -0.8615 22 6 2.2336 -3.6406 -0.0233 23 1 -0.4850 0.8401 -0.0004 24 1 0.9409 -2.3456 2.0287 25 1 -0.9695 -3.8904 2.0887 26 1 -0.6471 -4.1857 0.3597 27 1 0.4887 -5.9205 1.6143 28 1 1.2130 -4.7245 2.7129 29 1 3.4694 -2.6630 -1.4712 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075692733.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:32 Heat of formation + Delta-G solvation = -124.195665 kcal Electronic energy + Delta-G solvation = -19146.779556 eV Core-core repulsion = 15619.391001 eV Total energy + Delta-G solvation = -3527.388556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.82868 -50.24076 -49.52107 -40.95055 -37.19654 -34.95905 -32.90698 -31.37395 -29.92158 -27.30601 -24.87701 -24.51906 -23.07750 -21.41453 -19.24195 -19.05846 -18.44098 -18.22224 -17.81440 -16.88195 -16.64616 -16.57510 -16.04599 -16.00565 -15.57359 -15.38142 -15.10550 -14.93204 -14.36042 -14.00165 -13.77921 -13.34079 -12.99860 -12.77364 -12.70063 -12.52783 -12.17999 -11.93581 -11.79745 -11.09354 -10.53944 -9.83576 -9.64014 -8.78762 -7.99008 -6.20115 -0.30136 -0.27369 1.50253 1.52642 1.57799 2.10320 2.30681 2.50261 3.04585 3.10273 3.27174 3.37318 3.58299 3.84349 3.95010 4.16351 4.38542 4.45684 4.54825 4.80849 4.86581 4.92624 4.99753 5.16877 5.23592 5.39901 5.61689 5.78225 6.10725 6.58328 7.02210 7.05945 7.52719 9.04208 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.007927 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.216763 B = 3531.441428 C = 4545.282193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.257 3.743 10 H 0.035 0.965 11 N -0.659 5.659 12 C 0.054 3.946 13 C -0.108 4.108 14 C -0.102 4.102 15 C 0.091 3.909 16 F -0.121 7.121 17 C 0.010 3.990 18 F -0.128 7.128 19 C 0.086 3.914 20 F -0.127 7.127 21 C -0.116 4.116 22 C -0.040 4.040 23 H 0.258 0.742 24 H 0.329 0.671 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 -8.870 1.740 9.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.160 4.160 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.591 4.591 8 H 0.080 0.920 9 C 0.149 3.851 10 H 0.052 0.948 11 N -0.286 5.286 12 C -0.075 4.075 13 C -0.146 4.146 14 C -0.104 4.104 15 C 0.071 3.929 16 F -0.100 7.100 17 C -0.011 4.011 18 F -0.107 7.107 19 C 0.066 3.934 20 F -0.105 7.105 21 C -0.135 4.135 22 C -0.043 4.043 23 H 0.067 0.933 24 H 0.147 0.853 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.573 -8.533 1.439 9.028 hybrid contribution 1.648 -0.024 0.063 1.649 sum 4.221 -8.557 1.501 9.658 Atomic orbital electron populations 1.70196 1.06873 1.26760 1.46955 1.25559 0.95277 1.01458 0.93753 0.85867 0.78498 0.79999 0.78651 1.19843 1.21502 1.20030 1.21221 0.92658 0.90268 1.54928 0.92045 1.17992 0.87317 0.88702 0.91133 0.94790 1.61105 1.37260 1.25080 1.05179 1.22161 0.95978 0.87694 1.01712 1.21223 0.93162 1.02762 0.97496 1.19855 0.97679 0.92152 1.00673 1.17206 0.95343 0.85888 0.94478 1.91496 1.95075 1.50265 1.73130 1.17427 0.91675 0.88077 1.03953 1.91489 1.65503 1.58012 1.95693 1.17326 0.87644 0.94691 0.93785 1.91508 1.52894 1.96200 1.69940 1.21333 0.92991 0.98159 1.01034 1.21027 0.95960 0.95446 0.91863 0.93291 0.85304 0.89193 0.92114 0.88555 0.89060 0.82523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.52 12.76 21.45 0.27 -46.25 15 2 C 0.04 2.25 5.39 84.66 0.46 2.70 15 3 Si 0.94 40.21 29.54 68.60 2.03 42.24 15 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 15 5 H -0.29 -12.37 7.11 99.48 0.71 -11.66 15 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 7 C -0.55 -26.73 7.81 25.60 0.20 -26.53 15 8 H 0.06 2.91 6.74 -2.91 -0.02 2.89 15 9 C 0.26 11.32 2.38 43.46 0.10 11.43 15 10 H 0.03 1.71 8.14 -2.39 -0.02 1.69 15 11 N -0.66 -27.16 5.94 -499.66 -2.97 -30.13 15 12 C 0.05 1.74 6.62 86.22 0.57 2.31 15 13 C -0.11 -3.02 5.48 29.82 0.16 -2.86 15 14 C -0.10 -3.37 5.78 -19.80 -0.11 -3.48 15 15 C 0.09 2.92 7.23 22.46 0.16 3.09 15 16 F -0.12 -3.67 16.47 44.97 0.74 -2.93 15 17 C 0.01 0.32 7.31 22.40 0.16 0.48 15 18 F -0.13 -4.23 17.10 44.97 0.77 -3.46 15 19 C 0.09 2.90 7.30 22.36 0.16 3.07 15 20 F -0.13 -4.22 17.19 44.97 0.77 -3.44 15 21 C -0.12 -4.15 8.70 22.38 0.19 -3.96 15 22 C -0.04 -1.51 5.47 -19.86 -0.11 -1.61 15 23 H 0.26 13.31 8.31 -92.71 -0.77 12.54 15 24 H 0.33 13.48 8.55 -89.69 -0.77 12.71 15 25 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 26 H 0.06 2.01 8.05 -2.39 -0.02 2.00 15 27 H 0.10 2.32 7.93 -2.39 -0.02 2.30 15 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 29 H 0.16 5.69 7.09 -2.91 -0.02 5.67 15 Total: -1.00 -51.92 260.89 4.02 -47.91 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.45 Total: 11.42 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 1.95 Total: -15.37 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -2.69 Total: -76.38 kcal Atomic # 9 Polarization: -12.11 SS G_CDS: 2.28 Total: -9.83 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -51.92 4.02 -47.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075692733.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.288 kcal (2) G-P(sol) polarization free energy of solvation -51.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds