Wall clock time and date at job start Mon Mar 30 2020 06:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30673 * 123.22670 * 2 1 4 4 C 1.29526 * 117.63152 * 180.02562 * 3 2 1 5 5 C 1.50696 * 124.56128 * 180.02562 * 4 3 2 6 6 S 1.81401 * 109.47059 * 89.97692 * 5 4 3 7 7 C 1.81397 * 103.00321 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47121 * 64.99636 * 7 6 5 9 9 C 1.53000 * 109.47344 * 185.00122 * 7 6 5 10 10 S 1.70880 * 110.87322 * 359.72376 * 4 3 2 11 11 C 1.38588 * 123.22187 * 180.02562 * 2 1 3 12 12 C 1.40045 * 126.25431 * 359.97438 * 11 2 1 13 13 H 1.08004 * 119.99705 * 359.72766 * 12 11 2 14 14 C 1.40072 * 119.99963 * 179.97438 * 12 11 2 15 15 N 1.30860 * 120.00018 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00095 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47196 * 59.99853 * 16 14 12 18 18 H 1.48494 * 109.47285 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46819 * 300.00351 * 16 14 12 20 20 H 1.08994 * 109.47336 * 269.97930 * 1 2 3 21 21 H 1.09002 * 109.46306 * 29.97934 * 1 2 3 22 22 H 1.08996 * 109.47202 * 149.97052 * 1 2 3 23 23 H 1.08999 * 109.47290 * 209.97669 * 5 4 3 24 24 H 1.09002 * 109.47052 * 329.98207 * 5 4 3 25 25 H 1.09003 * 109.46832 * 305.00207 * 7 6 5 26 26 H 1.09003 * 109.46801 * 60.00552 * 8 7 6 27 27 H 1.09006 * 109.47008 * 179.97438 * 8 7 6 28 28 H 1.08999 * 109.47655 * 300.00113 * 8 7 6 29 29 H 1.08999 * 109.46751 * 59.99780 * 9 7 6 30 30 H 1.08998 * 109.46869 * 179.97438 * 9 7 6 31 31 H 1.08997 * 109.46829 * 299.99659 * 9 7 6 32 32 H 0.97005 * 120.00071 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2231 1.0931 0.0000 4 6 3.5122 0.9668 -0.0005 5 6 4.4840 2.1186 0.0000 6 16 4.8740 2.5799 1.7104 7 6 6.0357 3.9581 1.5067 8 6 5.3185 5.1360 0.8441 9 6 6.5630 4.3876 2.8772 10 16 3.9625 -0.6816 0.0066 11 6 2.2664 -1.1594 -0.0005 12 6 1.7754 -2.4709 -0.0006 13 1 0.7101 -2.6487 0.0042 14 6 2.6659 -3.5521 -0.0017 15 7 3.9567 -3.3367 -0.0021 16 14 2.0110 -5.3016 -0.0025 17 1 1.1814 -5.5190 -1.2147 18 1 3.1487 -6.2560 -0.0030 19 1 1.1824 -5.5204 1.2102 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3632 0.8902 -0.5135 22 1 -0.3633 -0.8897 -0.5143 23 1 5.3985 1.8226 -0.5140 24 1 4.0381 2.9704 -0.5134 25 1 6.8691 3.6411 0.8797 26 1 4.4851 5.4530 1.4711 27 1 6.0165 5.9643 0.7221 28 1 4.9429 4.8301 -0.1323 29 1 7.0740 3.5483 3.3491 30 1 7.2614 5.2154 2.7547 31 1 5.7296 4.7046 3.5041 32 1 4.5734 -4.0854 -0.0033 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082420357.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:18 Heat of formation + Delta-G solvation = -6.900004 kcal Electronic energy + Delta-G solvation = -14422.421054 eV Core-core repulsion = 12020.172382 eV Total energy + Delta-G solvation = -2402.248671 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.69913 -34.54843 -34.39356 -31.45662 -28.66370 -27.85411 -26.98807 -23.77511 -21.94444 -20.95471 -18.76496 -17.08710 -15.97858 -15.78031 -15.12559 -14.70186 -14.25416 -13.73340 -13.22744 -13.09076 -12.93767 -12.25641 -12.13811 -11.89327 -11.81090 -11.62328 -11.58824 -11.25679 -11.19250 -11.08641 -10.85728 -10.62042 -10.46554 -9.82485 -9.30214 -9.26232 -7.90459 -7.79701 -7.15484 -7.10190 -6.99759 -4.63666 1.97239 2.56431 2.85131 2.89197 2.99662 3.29247 3.40875 3.58209 3.95821 4.26879 4.94036 4.94623 5.04267 5.38938 5.59304 5.63312 5.77358 5.82172 5.88606 5.92064 6.14747 6.22302 6.30154 6.47727 6.63842 6.69198 6.76983 6.90670 7.26424 7.62325 7.86089 8.26080 8.27457 9.66623 9.73023 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.035303 B = 0.005412 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.943903 B = 5172.215913 C = 5692.667974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 C -0.139 4.139 3 N -0.412 5.412 4 C -0.185 4.185 5 C 0.049 3.951 6 S -0.269 6.269 7 C -0.072 4.072 8 C -0.144 4.144 9 C -0.128 4.128 10 S 0.140 5.860 11 C 0.002 3.998 12 C -0.358 4.358 13 H 0.101 0.899 14 C 0.047 3.953 15 N -0.767 5.767 16 Si 0.938 3.062 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.259 1.259 20 H 0.038 0.962 21 H 0.043 0.957 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.730 4.425 0.716 5.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.278 4.278 3 N -0.125 5.125 4 C -0.453 4.453 5 C -0.101 4.101 6 S -0.041 6.041 7 C -0.201 4.201 8 C -0.203 4.203 9 C -0.186 4.186 10 S 0.393 5.607 11 C -0.123 4.123 12 C -0.396 4.396 13 H 0.119 0.881 14 C -0.176 4.176 15 N -0.394 5.394 16 Si 0.761 3.239 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.183 1.183 20 H 0.057 0.943 21 H 0.062 0.938 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.501 4.118 1.674 6.326 hybrid contribution -0.631 -0.225 -1.119 1.304 sum 3.870 3.893 0.556 5.517 Atomic orbital electron populations 1.19649 0.90048 0.99935 0.99465 1.19951 0.95658 0.86213 1.26012 1.64953 1.05002 1.33573 1.09015 1.24770 0.93094 0.98831 1.28573 1.21158 0.98444 0.97720 0.92806 1.87328 1.58286 1.41520 1.16923 1.23034 0.99432 0.97168 1.00504 1.22057 1.00460 0.96839 1.00976 1.21559 1.00991 1.01217 0.94882 1.83996 1.07525 0.95765 1.73428 1.23169 0.94239 0.97193 0.97685 1.19245 0.95652 0.88452 1.36262 0.88104 1.26289 0.94504 1.03628 0.93138 1.68987 1.03113 1.35799 1.31468 0.85805 0.79449 0.78183 0.80447 1.18350 1.19716 1.18332 0.94304 0.93795 0.92981 0.90973 0.90498 0.90257 0.91595 0.92583 0.92509 0.91903 0.91953 0.91950 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.69 10.06 36.01 0.36 -0.33 16 2 C -0.14 -3.64 6.90 -82.95 -0.57 -4.21 16 3 N -0.41 -10.91 10.48 -7.08 -0.07 -10.99 16 4 C -0.19 -4.60 6.62 -13.25 -0.09 -4.69 16 5 C 0.05 1.01 6.21 36.00 0.22 1.23 16 6 S -0.27 -5.22 21.13 -107.50 -2.27 -7.49 16 7 C -0.07 -1.03 3.38 -26.73 -0.09 -1.12 16 8 C -0.14 -1.86 9.10 37.15 0.34 -1.52 16 9 C -0.13 -1.55 9.20 37.16 0.34 -1.21 16 10 S 0.14 3.56 20.23 -107.50 -2.17 1.39 16 11 C 0.00 0.04 6.25 -38.78 -0.24 -0.20 16 12 C -0.36 -8.82 8.92 -38.22 -0.34 -9.16 16 13 H 0.10 2.30 6.95 -52.48 -0.36 1.94 16 14 C 0.05 1.07 5.50 -17.28 -0.09 0.98 16 15 N -0.77 -18.09 10.76 55.56 0.60 -17.49 16 16 Si 0.94 16.85 29.56 -169.99 -5.03 11.82 16 17 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 18 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 19 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 20 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.05 1.05 7.15 -51.93 -0.37 0.68 16 23 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 24 H 0.08 1.53 7.14 -51.92 -0.37 1.16 16 25 H 0.08 1.08 8.14 -51.92 -0.42 0.65 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.77 6.92 -51.93 -0.36 0.41 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.30 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -28.06 295.35 -9.07 -37.13 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.40 Total: 1.41 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -0.16 Total: -20.23 kcal Atomic # 7 Polarization: -29.00 SS G_CDS: 0.52 Total: -28.48 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -4.45 Total: -6.10 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.06 -9.07 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082420357.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.226 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds