Wall clock time and date at job start Mon Mar 30 2020 06:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30673 * 123.22670 * 2 1 4 4 C 1.29526 * 117.63152 * 180.02562 * 3 2 1 5 5 C 1.50696 * 124.56128 * 180.02562 * 4 3 2 6 6 S 1.81401 * 109.47059 * 89.97692 * 5 4 3 7 7 C 1.81397 * 103.00321 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47121 * 64.99636 * 7 6 5 9 9 C 1.53000 * 109.47344 * 185.00122 * 7 6 5 10 10 S 1.70880 * 110.87322 * 359.72376 * 4 3 2 11 11 C 1.38588 * 123.22187 * 180.02562 * 2 1 3 12 12 C 1.40045 * 126.25431 * 359.97438 * 11 2 1 13 13 H 1.08004 * 119.99705 * 359.72766 * 12 11 2 14 14 C 1.40072 * 119.99963 * 179.97438 * 12 11 2 15 15 N 1.30860 * 120.00018 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00095 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47196 * 59.99853 * 16 14 12 18 18 H 1.48494 * 109.47285 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46819 * 300.00351 * 16 14 12 20 20 H 1.08994 * 109.47336 * 269.97930 * 1 2 3 21 21 H 1.09002 * 109.46306 * 29.97934 * 1 2 3 22 22 H 1.08996 * 109.47202 * 149.97052 * 1 2 3 23 23 H 1.08999 * 109.47290 * 209.97669 * 5 4 3 24 24 H 1.09002 * 109.47052 * 329.98207 * 5 4 3 25 25 H 1.09003 * 109.46832 * 305.00207 * 7 6 5 26 26 H 1.09003 * 109.46801 * 60.00552 * 8 7 6 27 27 H 1.09006 * 109.47008 * 179.97438 * 8 7 6 28 28 H 1.08999 * 109.47655 * 300.00113 * 8 7 6 29 29 H 1.08999 * 109.46751 * 59.99780 * 9 7 6 30 30 H 1.08998 * 109.46869 * 179.97438 * 9 7 6 31 31 H 1.08997 * 109.46829 * 299.99659 * 9 7 6 32 32 H 0.97005 * 120.00071 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2231 1.0931 0.0000 4 6 3.5122 0.9668 -0.0005 5 6 4.4840 2.1186 0.0000 6 16 4.8740 2.5799 1.7104 7 6 6.0357 3.9581 1.5067 8 6 5.3185 5.1360 0.8441 9 6 6.5630 4.3876 2.8772 10 16 3.9625 -0.6816 0.0066 11 6 2.2664 -1.1594 -0.0005 12 6 1.7754 -2.4709 -0.0006 13 1 0.7101 -2.6487 0.0042 14 6 2.6659 -3.5521 -0.0017 15 7 3.9567 -3.3367 -0.0021 16 14 2.0110 -5.3016 -0.0025 17 1 1.1814 -5.5190 -1.2147 18 1 3.1487 -6.2560 -0.0030 19 1 1.1824 -5.5204 1.2102 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3632 0.8902 -0.5135 22 1 -0.3633 -0.8897 -0.5143 23 1 5.3985 1.8226 -0.5140 24 1 4.0381 2.9704 -0.5134 25 1 6.8691 3.6411 0.8797 26 1 4.4851 5.4530 1.4711 27 1 6.0165 5.9643 0.7221 28 1 4.9429 4.8301 -0.1323 29 1 7.0740 3.5483 3.3491 30 1 7.2614 5.2154 2.7547 31 1 5.7296 4.7046 3.5041 32 1 4.5734 -4.0854 -0.0033 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082420357.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:18 Heat of formation + Delta-G solvation = -21.827127 kcal Electronic energy + Delta-G solvation = -14423.068342 eV Core-core repulsion = 12020.172382 eV Total energy + Delta-G solvation = -2402.895960 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58831 -36.20117 -35.62735 -33.24538 -30.43820 -29.59722 -28.04806 -25.62482 -23.43984 -22.40567 -20.62140 -18.94001 -17.62535 -17.39545 -16.71815 -16.12593 -15.63433 -15.22581 -14.75913 -14.70216 -14.36499 -13.81593 -13.60415 -13.54446 -13.24100 -13.14799 -13.13980 -12.92795 -12.48584 -12.32795 -12.19628 -12.03992 -12.02655 -11.45863 -11.23553 -10.66246 -9.82361 -9.71701 -9.02824 -8.88924 -8.59947 -6.51826 0.34014 0.97538 1.37565 1.48859 1.54226 1.55711 1.80226 1.95252 2.16500 2.44816 3.06875 3.83171 3.88875 3.97885 4.24312 4.35296 4.48104 4.70841 4.72709 4.78273 4.85455 4.86982 4.90984 4.94539 5.04241 5.15404 5.23595 5.26314 5.43269 5.76775 6.01809 6.39635 6.42411 7.80208 7.95566 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.035303 B = 0.005412 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.943903 B = 5172.215913 C = 5692.667974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 C -0.177 4.177 3 N -0.435 5.435 4 C -0.191 4.191 5 C 0.056 3.944 6 S -0.322 6.322 7 C -0.055 4.055 8 C -0.142 4.142 9 C -0.126 4.126 10 S 0.116 5.884 11 C -0.028 4.028 12 C -0.378 4.378 13 H 0.113 0.887 14 C 0.010 3.990 15 N -0.791 5.791 16 Si 1.014 2.986 17 H -0.252 1.252 18 H -0.262 1.262 19 H -0.254 1.254 20 H 0.044 0.956 21 H 0.050 0.950 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.308 4.240 0.810 6.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.315 4.315 3 N -0.149 5.149 4 C -0.459 4.459 5 C -0.094 4.094 6 S -0.095 6.095 7 C -0.184 4.184 8 C -0.201 4.201 9 C -0.184 4.184 10 S 0.368 5.632 11 C -0.152 4.152 12 C -0.415 4.415 13 H 0.131 0.869 14 C -0.210 4.210 15 N -0.417 5.417 16 Si 0.832 3.168 17 H -0.175 1.175 18 H -0.186 1.186 19 H -0.178 1.178 20 H 0.062 0.938 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.065 3.943 1.759 6.655 hybrid contribution -0.681 -0.089 -1.117 1.311 sum 4.384 3.854 0.642 5.872 Atomic orbital electron populations 1.19645 0.87867 1.00807 1.00046 1.20552 0.97424 0.86208 1.27273 1.65018 1.05728 1.34026 1.10084 1.25347 0.93357 0.99630 1.27599 1.21087 0.98016 0.96549 0.93736 1.87386 1.60754 1.45215 1.16101 1.23195 0.97958 0.94894 1.02350 1.22034 1.00893 0.97131 1.00005 1.21585 1.01370 1.02164 0.93254 1.83824 1.08093 0.96806 1.74429 1.23546 0.94514 0.98317 0.98816 1.19682 0.96809 0.88582 1.36408 0.86877 1.27340 0.94369 1.07633 0.91684 1.69022 1.04418 1.37676 1.30610 0.84705 0.79069 0.72315 0.80693 1.17525 1.18582 1.17808 0.93769 0.93142 0.91783 0.89793 0.90085 0.89083 0.92306 0.89235 0.93519 0.92328 0.88487 0.92436 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -1.07 10.06 71.24 0.72 -0.36 16 2 C -0.18 -9.47 6.90 42.82 0.30 -9.18 16 3 N -0.43 -23.64 10.48 -176.30 -1.85 -25.49 16 4 C -0.19 -9.75 6.62 88.45 0.59 -9.17 16 5 C 0.06 2.35 6.21 71.23 0.44 2.79 16 6 S -0.32 -12.49 21.13 -56.49 -1.19 -13.69 16 7 C -0.06 -1.47 3.38 30.59 0.10 -1.36 16 8 C -0.14 -3.32 9.10 71.98 0.66 -2.67 16 9 C -0.13 -2.72 9.20 71.98 0.66 -2.05 16 10 S 0.12 6.06 20.23 -56.49 -1.14 4.92 16 11 C -0.03 -1.50 6.25 22.79 0.14 -1.36 16 12 C -0.38 -18.66 8.92 23.15 0.21 -18.45 16 13 H 0.11 5.12 6.95 -2.91 -0.02 5.10 16 14 C 0.01 0.45 5.50 85.28 0.47 0.92 16 15 N -0.79 -37.23 10.76 21.86 0.24 -36.99 16 16 Si 1.01 33.10 29.56 68.60 2.03 35.13 16 17 H -0.25 -7.88 7.11 99.48 0.71 -7.17 16 18 H -0.26 -8.03 7.11 99.48 0.71 -7.33 16 19 H -0.25 -8.08 7.11 99.48 0.71 -7.37 16 20 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 21 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.06 2.59 7.15 -2.39 -0.02 2.57 16 23 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 24 H 0.08 3.25 7.14 -2.39 -0.02 3.24 16 25 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.05 1.19 6.92 -2.39 -0.02 1.17 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.31 12.93 8.30 -92.70 -0.77 12.16 16 Total: -1.00 -61.75 295.35 3.46 -58.29 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.11 Total: 18.72 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 4.28 Total: -40.89 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -1.61 Total: -62.48 kcal Atomic # 14 Polarization: 33.10 SS G_CDS: 2.03 Total: 35.13 kcal Atomic # 16 Polarization: -6.43 SS G_CDS: -2.34 Total: -8.77 kcal Total: -61.75 3.46 -58.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082420357.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.458 kcal (2) G-P(sol) polarization free energy of solvation -61.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds