Wall clock time and date at job start Mon Mar 30 2020 06:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47182 * 2 1 4 4 S 1.81406 * 109.47084 * 179.97438 * 3 2 1 5 5 C 1.81402 * 102.99773 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47061 * 180.02562 * 5 4 3 7 7 N 1.29524 * 124.56339 * 89.97306 * 6 5 4 8 8 C 1.30675 * 117.63418 * 180.02562 * 7 6 5 9 9 C 1.50693 * 123.22659 * 180.02562 * 8 7 6 10 10 C 1.38591 * 113.54740 * 0.02562 * 8 7 6 11 11 C 1.40048 * 126.25196 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99889 * 352.98620 * 11 10 8 13 13 C 1.40071 * 119.99876 * 173.26869 * 11 10 8 14 14 N 1.30860 * 119.99935 * 6.29324 * 13 11 10 15 15 Si 1.86798 * 119.99728 * 186.29197 * 13 11 10 16 16 H 1.48500 * 109.47066 * 94.98745 * 15 13 11 17 17 H 1.48496 * 109.47181 * 214.98538 * 15 13 11 18 18 H 1.48496 * 109.47634 * 334.98689 * 15 13 11 19 19 S 1.70891 * 124.56128 * 270.32778 * 6 5 4 20 20 H 1.08996 * 109.47079 * 59.99883 * 1 2 3 21 21 H 1.09000 * 109.47378 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47393 * 300.00018 * 1 2 3 23 23 H 1.08999 * 109.47393 * 239.99982 * 2 1 3 24 24 H 1.09002 * 109.46781 * 119.99829 * 2 1 3 25 25 H 1.08999 * 109.47210 * 60.00220 * 3 2 1 26 26 H 1.08996 * 109.47209 * 300.00037 * 3 2 1 27 27 H 1.09007 * 109.47340 * 60.00043 * 5 4 3 28 28 H 1.09006 * 109.47349 * 300.00294 * 5 4 3 29 29 H 1.09004 * 109.47577 * 269.97999 * 9 8 7 30 30 H 1.09000 * 109.47050 * 29.98439 * 9 8 7 31 31 H 1.09001 * 109.47003 * 149.97747 * 9 8 7 32 32 H 0.97003 * 119.99792 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4424 0.0008 5 6 4.2621 3.2100 0.0015 6 6 5.7594 3.3798 0.0015 7 7 6.4896 3.4626 -1.0651 8 6 7.7786 3.6083 -0.9074 9 6 8.7441 3.7182 -2.0591 10 6 8.1725 3.6520 0.4206 11 6 9.4831 3.8005 0.8912 12 1 10.3112 3.7801 0.1983 13 6 9.7204 3.9695 2.2613 14 7 8.7331 3.8658 3.1140 15 14 11.4460 4.3428 2.8713 16 1 11.6109 5.8108 3.0224 17 1 11.6606 3.6828 4.1841 18 1 12.4386 3.8315 1.8922 19 16 6.7236 3.4805 1.4088 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8899 27 1 3.8427 3.6794 0.8915 28 1 3.8434 3.6799 -0.8886 29 1 9.0928 2.7236 -2.3373 30 1 8.2432 4.1790 -2.9105 31 1 9.5949 4.3318 -1.7626 32 1 8.8973 3.9833 4.0628 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082420405.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:24 Heat of formation + Delta-G solvation = -24.295640 kcal Electronic energy + Delta-G solvation = -14188.064745 eV Core-core repulsion = 11785.061742 eV Total energy + Delta-G solvation = -2403.003003 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59680 -36.20060 -35.56143 -33.24414 -30.42534 -29.59088 -28.12545 -25.62536 -23.37283 -22.27083 -20.62459 -18.93337 -17.65394 -17.33412 -16.67504 -16.30361 -15.71792 -15.32623 -14.76722 -14.56934 -14.39097 -14.04119 -13.67427 -13.60229 -13.30663 -13.19408 -13.11152 -12.92531 -12.48643 -12.30716 -12.03192 -11.96744 -11.72375 -11.49600 -11.23001 -10.87033 -9.83661 -9.70839 -9.03667 -8.89696 -8.61353 -6.52280 0.31608 0.95978 1.37670 1.48160 1.54330 1.56829 1.80456 1.94653 2.16072 2.43755 3.05672 3.82417 3.92540 3.95123 4.23390 4.39752 4.48492 4.55824 4.64872 4.73461 4.86377 4.87690 4.91367 5.03779 5.13099 5.15688 5.19383 5.37578 5.43246 5.76755 6.01607 6.39334 6.42104 7.79251 7.95292 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.035985 B = 0.004887 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.923542 B = 5728.566652 C = 6271.528083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.075 4.075 4 S -0.325 6.325 5 C 0.054 3.946 6 C -0.191 4.191 7 N -0.435 5.435 8 C -0.176 4.176 9 C -0.025 4.025 10 C -0.028 4.028 11 C -0.377 4.377 12 H 0.113 0.887 13 C 0.010 3.990 14 N -0.790 5.790 15 Si 1.015 2.985 16 H -0.258 1.258 17 H -0.262 1.262 18 H -0.249 1.249 19 S 0.115 5.885 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 -1.861 1.002 6.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.223 4.223 4 S -0.098 6.098 5 C -0.096 4.096 6 C -0.459 4.459 7 N -0.149 5.149 8 C -0.313 4.313 9 C -0.084 4.084 10 C -0.152 4.152 11 C -0.414 4.414 12 H 0.131 0.869 13 C -0.210 4.210 14 N -0.416 5.416 15 Si 0.832 3.168 16 H -0.182 1.182 17 H -0.186 1.186 18 H -0.172 1.172 19 S 0.367 5.633 20 H 0.080 0.920 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.365 -2.810 1.760 7.177 hybrid contribution 0.328 1.249 -0.494 1.382 sum -6.037 -1.562 1.266 6.363 Atomic orbital electron populations 1.21727 0.92706 1.02884 1.02570 1.21262 0.97386 0.93020 1.02671 1.23475 0.91094 1.02469 1.05280 1.87410 1.09917 1.14353 1.98113 1.21093 0.91598 0.92880 1.04003 1.25307 0.98817 1.27142 0.94645 1.65019 1.06057 1.09996 1.33823 1.20560 0.90250 1.26725 0.93796 1.19649 0.95445 1.00082 0.93234 1.23560 0.98193 0.98763 0.94694 1.19701 0.92059 1.35562 0.94120 0.86904 1.27347 1.05327 0.92314 0.96033 1.69060 1.35588 1.30811 1.06113 0.84646 0.73920 0.79601 0.78588 1.18217 1.18603 1.17180 1.83816 0.97772 1.73082 1.08588 0.91998 0.91102 0.91911 0.91868 0.91719 0.89402 0.89655 0.89425 0.90069 0.93757 0.93119 0.91743 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.91 71.98 0.71 -1.54 16 2 C -0.10 -2.35 5.94 30.59 0.18 -2.17 16 3 C -0.08 -1.99 5.94 71.98 0.43 -1.57 16 4 S -0.33 -12.65 21.72 -56.49 -1.23 -13.88 16 5 C 0.05 2.27 6.51 71.23 0.46 2.73 16 6 C -0.19 -9.73 6.62 88.45 0.59 -9.14 16 7 N -0.43 -23.63 10.48 -176.31 -1.85 -25.48 16 8 C -0.18 -9.38 6.90 42.81 0.30 -9.09 16 9 C -0.02 -1.09 10.04 71.23 0.71 -0.38 16 10 C -0.03 -1.51 6.24 22.79 0.14 -1.37 16 11 C -0.38 -18.60 8.87 23.15 0.21 -18.39 16 12 H 0.11 5.13 7.06 -2.91 -0.02 5.11 16 13 C 0.01 0.46 5.49 85.28 0.47 0.92 16 14 N -0.79 -37.00 10.80 21.86 0.24 -36.76 16 15 Si 1.01 33.02 29.57 68.60 2.03 35.05 16 16 H -0.26 -8.12 7.11 99.48 0.71 -7.41 16 17 H -0.26 -8.09 7.11 99.48 0.71 -7.39 16 18 H -0.25 -7.77 7.11 99.48 0.71 -7.07 16 19 S 0.12 5.98 20.27 -56.49 -1.14 4.84 16 20 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 21 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 28 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 2.60 7.24 -2.39 -0.02 2.58 16 32 H 0.31 12.81 8.30 -92.71 -0.77 12.04 16 Total: -1.00 -61.35 298.77 3.34 -58.01 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.10 Total: 18.22 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.20 Total: -39.99 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -1.61 Total: -62.25 kcal Atomic # 14 Polarization: 33.02 SS G_CDS: 2.03 Total: 35.05 kcal Atomic # 16 Polarization: -6.67 SS G_CDS: -2.37 Total: -9.04 kcal Total: -61.35 3.34 -58.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082420405.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.711 kcal (2) G-P(sol) polarization free energy of solvation -61.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds