Wall clock time and date at job start Mon Mar 30 2020 06:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81396 * 109.46778 * 2 1 4 4 C 1.81405 * 102.99622 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47040 * 180.02562 * 4 3 2 6 6 N 1.29521 * 124.56420 * 89.99871 * 5 4 3 7 7 C 1.30674 * 117.63047 * 179.97438 * 6 5 4 8 8 C 1.50704 * 123.22353 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46688 * 269.99647 * 8 7 6 10 10 C 1.38588 * 113.55381 * 359.97438 * 7 6 5 11 11 C 1.40037 * 126.25575 * 180.02562 * 10 7 6 12 12 H 1.08004 * 119.99834 * 7.62413 * 11 10 7 13 13 C 1.40075 * 120.00251 * 187.63059 * 11 10 7 14 14 N 1.30863 * 119.99598 * 7.63944 * 13 11 10 15 15 Si 1.86794 * 120.00073 * 187.64149 * 13 11 10 16 16 H 1.48500 * 109.47435 * 265.01382 * 15 13 11 17 17 H 1.48496 * 109.47170 * 25.01672 * 15 13 11 18 18 H 1.48503 * 109.47116 * 145.01509 * 15 13 11 19 19 S 1.70888 * 124.55768 * 270.29161 * 5 4 3 20 20 H 1.09001 * 109.47280 * 59.99973 * 1 2 3 21 21 H 1.09008 * 109.46828 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47057 * 299.99842 * 1 2 3 23 23 H 1.08997 * 109.46972 * 239.99674 * 2 1 3 24 24 H 1.09001 * 109.47280 * 120.00027 * 2 1 3 25 25 H 1.09000 * 109.47268 * 60.00535 * 4 3 2 26 26 H 1.08994 * 109.47177 * 299.99470 * 4 3 2 27 27 H 1.09003 * 109.47152 * 29.99190 * 8 7 6 28 28 H 1.09002 * 109.47359 * 149.99570 * 8 7 6 29 29 H 1.09000 * 109.47603 * 299.99988 * 9 8 7 30 30 H 1.08997 * 109.47526 * 60.00286 * 9 8 7 31 31 H 1.09009 * 109.46944 * 179.97438 * 9 8 7 32 32 H 0.96999 * 119.99706 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5058 0.0008 5 6 4.5963 2.8610 0.0015 6 7 4.9173 3.5215 1.0684 7 6 5.4853 4.6877 0.9113 8 6 5.9104 5.5611 2.0636 9 6 4.7574 6.4882 2.4532 10 6 5.6603 5.0441 -0.4165 11 6 6.2386 6.2297 -0.8864 12 1 6.7088 6.9126 -0.1942 13 6 6.2072 6.5302 -2.2542 14 7 5.5110 5.7829 -3.0724 15 14 7.1591 7.9974 -2.9103 16 1 6.2585 9.1753 -2.9923 17 1 8.2903 8.3018 -1.9977 18 1 7.6853 7.6816 -4.2626 19 16 5.0146 3.7362 -1.4054 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 4.2406 0.9542 -0.8890 26 1 4.2398 0.9545 0.8910 27 1 6.1768 4.9349 2.9151 28 1 6.7730 6.1584 1.7679 29 1 4.4910 7.1144 1.6017 30 1 3.8949 5.8910 2.7489 31 1 5.0647 7.1196 3.2869 32 1 5.4896 5.9907 -4.0196 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082423581.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:35 Heat of formation + Delta-G solvation = -22.013420 kcal Electronic energy + Delta-G solvation = -14512.120538 eV Core-core repulsion = 12109.216500 eV Total energy + Delta-G solvation = -2402.904038 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.69501 -36.18963 -34.24378 -33.61874 -31.66768 -30.38829 -26.40161 -24.81641 -24.34986 -22.37000 -20.58378 -18.87108 -17.67443 -17.26607 -16.75826 -15.80404 -15.72154 -15.50171 -14.88124 -14.68985 -14.35531 -14.17789 -13.83574 -13.57935 -13.19717 -13.09039 -12.92333 -12.65521 -12.48205 -12.27290 -12.15210 -12.02302 -11.70421 -11.45745 -11.08981 -10.82865 -9.78421 -9.69871 -9.12181 -8.80601 -8.59396 -6.47596 0.33029 0.98704 1.37854 1.47408 1.53913 1.58331 1.82073 1.95857 2.16287 2.47277 3.08205 3.83103 4.05369 4.12240 4.24877 4.38570 4.47221 4.54417 4.64265 4.77145 4.86100 4.89903 4.92721 5.01433 5.10844 5.18908 5.22796 5.48520 5.54738 5.79389 6.05105 6.41995 6.44623 7.82576 7.97324 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.025431 B = 0.006181 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.773069 B = 4529.022491 C = 5253.774813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 S -0.329 6.329 4 C 0.055 3.945 5 C -0.187 4.187 6 N -0.432 5.432 7 C -0.161 4.161 8 C -0.006 4.006 9 C -0.128 4.128 10 C -0.019 4.019 11 C -0.379 4.379 12 H 0.112 0.888 13 C 0.013 3.987 14 N -0.790 5.790 15 Si 1.009 2.991 16 H -0.258 1.258 17 H -0.248 1.248 18 H -0.262 1.262 19 S 0.099 5.901 20 H 0.057 0.943 21 H 0.097 0.903 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 -3.128 -0.067 3.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.229 4.229 3 S -0.103 6.103 4 C -0.095 4.095 5 C -0.455 4.455 6 N -0.146 5.146 7 C -0.298 4.298 8 C -0.046 4.046 9 C -0.186 4.186 10 C -0.143 4.143 11 C -0.416 4.416 12 H 0.130 0.870 13 C -0.207 4.207 14 N -0.416 5.416 15 Si 0.827 3.173 16 H -0.183 1.183 17 H -0.171 1.171 18 H -0.186 1.186 19 S 0.351 5.649 20 H 0.076 0.924 21 H 0.115 0.885 22 H 0.075 0.925 23 H 0.107 0.893 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.934 -2.951 -0.826 4.242 hybrid contribution 1.148 -0.179 0.360 1.216 sum -1.786 -3.130 -0.466 3.634 Atomic orbital electron populations 1.21500 0.91113 1.03621 1.02536 1.23364 1.00925 0.93273 1.05364 1.87484 1.08437 1.16243 1.98114 1.21104 0.90732 0.93722 1.03946 1.25177 1.21641 1.04459 0.94205 1.64998 1.09154 1.06833 1.33591 1.20448 1.19478 0.96556 0.93367 1.19470 0.97399 0.94760 0.93010 1.21599 0.97887 0.98591 1.00509 1.23496 0.97988 0.98248 0.94588 1.19635 1.26321 1.01550 0.94138 0.86987 1.27301 0.94924 1.02064 0.96447 1.69181 1.28634 1.36576 1.07225 0.84729 0.78628 0.75507 0.78417 1.18257 1.17120 1.18638 1.83742 1.61163 1.10591 1.09359 0.92380 0.88472 0.92493 0.89310 0.89540 0.89517 0.89994 0.92937 0.91579 0.94187 0.95065 0.90635 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.92 71.98 0.71 -2.08 16 2 C -0.08 -2.12 6.66 71.98 0.48 -1.64 16 3 S -0.33 -12.80 21.72 -56.49 -1.23 -14.03 16 4 C 0.06 2.28 6.51 71.24 0.46 2.74 16 5 C -0.19 -9.42 6.62 88.45 0.59 -8.84 16 6 N -0.43 -23.08 10.48 -176.29 -1.85 -24.92 16 7 C -0.16 -8.36 6.15 42.82 0.26 -8.10 16 8 C -0.01 -0.28 6.14 29.85 0.18 -0.10 16 9 C -0.13 -4.96 9.89 71.98 0.71 -4.25 16 10 C -0.02 -1.02 6.21 22.79 0.14 -0.88 16 11 C -0.38 -18.52 8.93 23.15 0.21 -18.31 16 12 H 0.11 5.06 6.90 -2.91 -0.02 5.04 16 13 C 0.01 0.59 5.48 85.28 0.47 1.06 16 14 N -0.79 -37.32 10.90 21.86 0.24 -37.08 16 15 Si 1.01 33.13 29.57 68.60 2.03 35.15 16 16 H -0.26 -8.21 7.11 99.48 0.71 -7.50 16 17 H -0.25 -7.82 7.11 99.48 0.71 -7.11 16 18 H -0.26 -8.21 7.11 99.48 0.71 -7.50 16 19 S 0.10 5.12 20.37 -56.49 -1.15 3.97 16 20 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 26 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 28 H 0.07 2.67 7.09 -2.39 -0.02 2.65 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.31 12.90 8.30 -92.71 -0.77 12.13 16 Total: -1.00 -61.04 298.72 3.36 -57.68 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 1.10 Total: 19.62 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 4.22 Total: -40.40 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -1.61 Total: -62.01 kcal Atomic # 14 Polarization: 33.13 SS G_CDS: 2.03 Total: 35.15 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -2.38 Total: -10.06 kcal Total: -61.04 3.36 -57.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082423581.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.667 kcal (2) G-P(sol) polarization free energy of solvation -61.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds