Wall clock time and date at job start Mon Mar 30 2020 06:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46996 * 2 1 4 4 C 1.50699 * 109.47230 * 179.97438 * 3 2 1 5 5 N 1.30666 * 123.22578 * 269.70694 * 4 3 2 6 6 C 1.29523 * 117.63799 * 180.27070 * 5 4 3 7 7 C 1.50699 * 124.56852 * 179.97438 * 6 5 4 8 8 S 1.81399 * 109.47150 * 90.01727 * 7 6 5 9 9 C 1.81397 * 103.00165 * 180.02562 * 8 7 6 10 10 S 1.70891 * 110.87178 * 359.97438 * 6 5 4 11 11 C 1.38595 * 123.22508 * 89.99489 * 4 3 2 12 12 C 1.40038 * 126.25294 * 359.75637 * 11 4 3 13 13 H 1.08006 * 120.00206 * 359.97438 * 12 11 4 14 14 C 1.40075 * 120.00143 * 180.02562 * 12 11 4 15 15 N 1.30870 * 119.99633 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00239 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47335 * 89.99691 * 16 14 12 18 18 H 1.48506 * 109.46932 * 210.00000 * 16 14 12 19 19 H 1.48502 * 109.46996 * 329.99385 * 16 14 12 20 20 H 1.09003 * 109.46883 * 60.00714 * 1 2 3 21 21 H 1.09000 * 109.46791 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47092 * 300.00396 * 1 2 3 23 23 H 1.08994 * 109.47092 * 239.99604 * 2 1 3 24 24 H 1.09000 * 109.46455 * 119.99915 * 2 1 3 25 25 H 1.08994 * 109.47524 * 59.99868 * 3 2 1 26 26 H 1.09007 * 109.47161 * 299.99542 * 3 2 1 27 27 H 1.08998 * 109.47298 * 210.02100 * 7 6 5 28 28 H 1.09001 * 109.46757 * 330.02391 * 7 6 5 29 29 H 1.08998 * 109.47357 * 180.02562 * 9 8 7 30 30 H 1.09004 * 109.47080 * 300.00583 * 9 8 7 31 31 H 1.08996 * 109.47049 * 59.99770 * 9 8 7 32 32 H 0.97001 * 119.99679 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2625 1.4483 1.0940 6 6 5.5517 1.4531 0.9684 7 6 6.5230 1.4606 2.1205 8 16 6.9200 -0.2466 2.5878 9 6 8.0803 -0.0332 3.9658 10 16 6.0028 1.4498 -0.6799 11 6 4.3069 1.4423 -1.1584 12 6 3.8166 1.4372 -2.4701 13 1 2.7513 1.4324 -2.6485 14 6 4.7076 1.4370 -3.5510 15 7 5.9983 1.4422 -3.3349 16 14 4.0535 1.4309 -5.3006 17 1 3.8761 2.8293 -5.7677 18 1 5.0180 0.7314 -6.1871 19 1 2.7465 0.7269 -5.3380 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6768 1.9563 -0.8901 27 1 7.4354 1.9775 1.8232 28 1 6.0744 1.9750 2.9705 29 1 8.3921 -1.0109 4.3330 30 1 8.9538 0.5213 3.6227 31 1 7.5925 0.5185 4.7694 32 1 6.6153 1.4425 -4.0834 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082427749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:11 Heat of formation + Delta-G solvation = -8.788566 kcal Electronic energy + Delta-G solvation = -14654.439056 eV Core-core repulsion = 12252.108490 eV Total energy + Delta-G solvation = -2402.330566 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.87983 -34.45773 -33.80467 -30.80026 -28.86503 -28.29291 -26.89167 -23.81035 -21.79087 -20.39842 -18.75737 -17.11788 -15.86967 -15.71054 -15.04923 -14.27003 -13.75189 -13.66756 -13.54956 -13.20155 -12.96363 -12.60623 -12.28952 -12.08299 -11.85800 -11.67571 -11.44382 -11.19895 -10.91764 -10.74531 -10.50682 -10.36585 -9.91194 -9.83091 -9.43119 -9.20499 -7.89957 -7.79283 -7.16831 -7.11396 -7.01705 -4.63962 1.98796 2.57192 2.85170 2.90721 3.00028 3.28901 3.40292 3.58057 3.95706 4.26472 4.92252 5.39977 5.40823 5.54475 5.72025 5.78048 5.88163 5.90072 5.92321 6.18134 6.33111 6.44422 6.59894 6.63161 6.66067 6.86143 6.88283 7.15613 7.31531 7.62371 7.86717 8.26139 8.26919 9.65940 9.73610 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.007653 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.255992 B = 3657.757518 C = 4936.562188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.001 4.001 4 C -0.131 4.131 5 N -0.410 5.410 6 C -0.187 4.187 7 C 0.050 3.950 8 S -0.279 6.279 9 C -0.128 4.128 10 S 0.139 5.861 11 C 0.004 3.996 12 C -0.356 4.356 13 H 0.101 0.899 14 C 0.047 3.953 15 N -0.766 5.766 16 Si 0.936 3.064 17 H -0.264 1.264 18 H -0.271 1.271 19 H -0.256 1.256 20 H 0.049 0.951 21 H 0.044 0.956 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.025 -0.245 1.674 1.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.041 4.041 4 C -0.270 4.270 5 N -0.123 5.123 6 C -0.455 4.455 7 C -0.100 4.100 8 S -0.052 6.052 9 C -0.297 4.297 10 S 0.391 5.609 11 C -0.121 4.121 12 C -0.394 4.394 13 H 0.119 0.881 14 C -0.176 4.176 15 N -0.393 5.393 16 Si 0.759 3.241 17 H -0.188 1.188 18 H -0.196 1.196 19 H -0.179 1.179 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.769 -1.190 1.400 1.992 hybrid contribution -0.558 1.041 -0.149 1.191 sum 0.211 -0.149 1.250 1.277 Atomic orbital electron populations 1.21791 0.97216 1.00501 1.01060 1.21501 0.93733 0.98419 1.01803 1.19459 0.89565 0.95084 1.00014 1.19855 0.95215 1.25817 0.86108 1.64931 1.04947 1.08800 1.33599 1.24733 0.93087 1.28855 0.98775 1.21167 0.98546 0.92468 0.97833 1.87349 1.58150 1.17470 1.42238 1.23307 1.01084 1.05329 0.99974 1.84021 1.07610 1.73439 0.95785 1.23172 0.94149 0.97545 0.97210 1.19270 0.95638 1.36028 0.88419 0.88070 1.26288 0.94514 0.93187 1.03607 1.68998 1.03090 1.31485 1.35684 0.85785 0.80047 0.79736 0.78527 1.18836 1.19600 1.17936 0.93158 0.93670 0.93371 0.92204 0.92700 0.93255 0.92464 0.90848 0.90538 0.89024 0.91245 0.91264 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.12 -2.24 5.92 -26.73 -0.16 -2.40 16 3 C 0.00 -0.03 5.39 -27.89 -0.15 -0.18 16 4 C -0.13 -3.29 6.15 -82.96 -0.51 -3.80 16 5 N -0.41 -10.60 10.47 -7.08 -0.07 -10.68 16 6 C -0.19 -4.59 6.62 -13.25 -0.09 -4.67 16 7 C 0.05 1.02 6.51 36.01 0.23 1.26 16 8 S -0.28 -5.44 22.36 -107.50 -2.40 -7.84 16 9 C -0.13 -1.77 10.76 101.05 1.09 -0.68 16 10 S 0.14 3.47 20.23 -107.50 -2.17 1.30 16 11 C 0.00 0.10 6.25 -38.78 -0.24 -0.14 16 12 C -0.36 -8.58 8.92 -38.22 -0.34 -8.92 16 13 H 0.10 2.28 6.95 -52.48 -0.36 1.92 16 14 C 0.05 1.05 5.50 -17.27 -0.09 0.96 16 15 N -0.77 -17.86 10.76 55.56 0.60 -17.26 16 16 Si 0.94 16.73 29.56 -169.99 -5.03 11.71 16 17 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 18 H -0.27 -4.76 7.11 56.52 0.40 -4.35 16 19 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.16 7.16 -51.92 -0.37 0.79 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.30 6.24 8.30 -40.82 -0.34 5.91 16 LS Contribution 298.60 15.07 4.50 4.50 Total: -1.00 -27.38 298.60 -9.00 -36.37 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -4.52 Total: 2.38 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 0.10 Total: -20.48 kcal Atomic # 7 Polarization: -28.46 SS G_CDS: 0.52 Total: -27.94 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.71 kcal Atomic # 16 Polarization: -1.97 SS G_CDS: -4.58 Total: -6.54 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.38 -9.00 -36.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082427749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.586 kcal (2) G-P(sol) polarization free energy of solvation -27.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds