Wall clock time and date at job start Mon Mar 30 2020 06:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46996 * 2 1 4 4 C 1.50699 * 109.47230 * 179.97438 * 3 2 1 5 5 N 1.30666 * 123.22578 * 269.70694 * 4 3 2 6 6 C 1.29523 * 117.63799 * 180.27070 * 5 4 3 7 7 C 1.50699 * 124.56852 * 179.97438 * 6 5 4 8 8 S 1.81399 * 109.47150 * 90.01727 * 7 6 5 9 9 C 1.81397 * 103.00165 * 180.02562 * 8 7 6 10 10 S 1.70891 * 110.87178 * 359.97438 * 6 5 4 11 11 C 1.38595 * 123.22508 * 89.99489 * 4 3 2 12 12 C 1.40038 * 126.25294 * 359.75637 * 11 4 3 13 13 H 1.08006 * 120.00206 * 359.97438 * 12 11 4 14 14 C 1.40075 * 120.00143 * 180.02562 * 12 11 4 15 15 N 1.30870 * 119.99633 * 359.97438 * 14 12 11 16 16 Si 1.86790 * 120.00239 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47335 * 89.99691 * 16 14 12 18 18 H 1.48506 * 109.46932 * 210.00000 * 16 14 12 19 19 H 1.48502 * 109.46996 * 329.99385 * 16 14 12 20 20 H 1.09003 * 109.46883 * 60.00714 * 1 2 3 21 21 H 1.09000 * 109.46791 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47092 * 300.00396 * 1 2 3 23 23 H 1.08994 * 109.47092 * 239.99604 * 2 1 3 24 24 H 1.09000 * 109.46455 * 119.99915 * 2 1 3 25 25 H 1.08994 * 109.47524 * 59.99868 * 3 2 1 26 26 H 1.09007 * 109.47161 * 299.99542 * 3 2 1 27 27 H 1.08998 * 109.47298 * 210.02100 * 7 6 5 28 28 H 1.09001 * 109.46757 * 330.02391 * 7 6 5 29 29 H 1.08998 * 109.47357 * 180.02562 * 9 8 7 30 30 H 1.09004 * 109.47080 * 300.00583 * 9 8 7 31 31 H 1.08996 * 109.47049 * 59.99770 * 9 8 7 32 32 H 0.97001 * 119.99679 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2625 1.4483 1.0940 6 6 5.5517 1.4531 0.9684 7 6 6.5230 1.4606 2.1205 8 16 6.9200 -0.2466 2.5878 9 6 8.0803 -0.0332 3.9658 10 16 6.0028 1.4498 -0.6799 11 6 4.3069 1.4423 -1.1584 12 6 3.8166 1.4372 -2.4701 13 1 2.7513 1.4324 -2.6485 14 6 4.7076 1.4370 -3.5510 15 7 5.9983 1.4422 -3.3349 16 14 4.0535 1.4309 -5.3006 17 1 3.8761 2.8293 -5.7677 18 1 5.0180 0.7314 -6.1871 19 1 2.7465 0.7269 -5.3380 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6768 1.9563 -0.8901 27 1 7.4354 1.9775 1.8232 28 1 6.0744 1.9750 2.9705 29 1 8.3921 -1.0109 4.3330 30 1 8.9538 0.5213 3.6227 31 1 7.5925 0.5185 4.7694 32 1 6.6153 1.4425 -4.0834 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082427749.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:11 Heat of formation + Delta-G solvation = -23.135791 kcal Electronic energy + Delta-G solvation = -14655.061198 eV Core-core repulsion = 12252.108490 eV Total energy + Delta-G solvation = -2402.952708 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71635 -36.22655 -35.38893 -32.49327 -30.47047 -29.62898 -28.43480 -25.59620 -23.47309 -22.02148 -20.58303 -18.93988 -17.67630 -17.30754 -16.68708 -15.81968 -15.33631 -15.18172 -15.02028 -14.52598 -14.36808 -14.24176 -13.71401 -13.67033 -13.48786 -13.20126 -13.00500 -12.68762 -12.50255 -12.33552 -12.00456 -11.86727 -11.52379 -11.43240 -11.06331 -10.90915 -9.78540 -9.67977 -9.00640 -8.87213 -8.61848 -6.48516 0.35430 1.00716 1.37852 1.51506 1.54488 1.57088 1.83304 1.97699 2.17567 2.47353 3.09433 3.84569 4.24900 4.25161 4.35207 4.36846 4.39044 4.47209 4.59300 4.79302 4.86848 4.89885 4.98116 5.05434 5.19484 5.23533 5.27813 5.56874 5.60445 5.79937 6.05357 6.42937 6.45156 7.84740 7.97095 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.007653 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.255992 B = 3657.757518 C = 4936.562188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C 0.003 3.997 4 C -0.160 4.160 5 N -0.433 5.433 6 C -0.196 4.196 7 C 0.057 3.943 8 S -0.336 6.336 9 C -0.106 4.106 10 S 0.113 5.887 11 C -0.025 4.025 12 C -0.373 4.373 13 H 0.111 0.889 14 C 0.010 3.990 15 N -0.791 5.791 16 Si 1.010 2.990 17 H -0.256 1.256 18 H -0.263 1.263 19 H -0.250 1.250 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.034 0.966 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 -0.362 1.194 1.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C -0.037 4.037 4 C -0.298 4.298 5 N -0.146 5.146 6 C -0.463 4.463 7 C -0.093 4.093 8 S -0.111 6.111 9 C -0.274 4.274 10 S 0.365 5.635 11 C -0.149 4.149 12 C -0.411 4.411 13 H 0.129 0.871 14 C -0.210 4.210 15 N -0.417 5.417 16 Si 0.828 3.172 17 H -0.180 1.180 18 H -0.188 1.188 19 H -0.173 1.173 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.470 -1.300 0.932 1.667 hybrid contribution -0.337 1.060 0.081 1.115 sum 0.133 -0.240 1.014 1.050 Atomic orbital electron populations 1.21713 0.93747 1.02031 1.02153 1.21388 0.96669 0.96576 1.00042 1.19502 0.87558 0.96450 1.00209 1.20427 0.96919 1.26483 0.85945 1.65000 1.05632 1.09873 1.34096 1.25297 0.93386 1.28090 0.99523 1.21126 0.98275 0.93147 0.96755 1.87431 1.60787 1.16983 1.45862 1.23378 0.99663 1.07170 0.97235 1.83856 1.08309 1.74402 0.96901 1.23537 0.94339 0.98721 0.98335 1.19642 0.96601 1.36263 0.88555 0.87088 1.27299 0.94402 0.91833 1.07501 1.69034 1.04347 1.30818 1.37486 0.84715 0.79600 0.80067 0.72784 1.18033 1.18753 1.17281 0.91933 0.91944 0.92396 0.93726 0.94667 0.93202 0.91842 0.89427 0.89991 0.86871 0.89508 0.89755 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.91 71.99 0.71 -3.30 16 2 C -0.11 -4.19 5.92 30.60 0.18 -4.01 16 3 C 0.00 0.12 5.39 29.85 0.16 0.28 16 4 C -0.16 -8.29 6.15 42.82 0.26 -8.02 16 5 N -0.43 -23.04 10.47 -176.30 -1.85 -24.89 16 6 C -0.20 -9.81 6.62 88.45 0.59 -9.23 16 7 C 0.06 2.34 6.51 71.24 0.46 2.81 16 8 S -0.34 -12.98 22.36 -56.49 -1.26 -14.24 16 9 C -0.11 -2.64 10.76 113.37 1.22 -1.42 16 10 S 0.11 5.82 20.23 -56.49 -1.14 4.68 16 11 C -0.03 -1.33 6.25 22.79 0.14 -1.19 16 12 C -0.37 -18.18 8.92 23.15 0.21 -17.98 16 13 H 0.11 5.01 6.95 -2.91 -0.02 4.99 16 14 C 0.01 0.44 5.50 85.28 0.47 0.91 16 15 N -0.79 -36.95 10.76 21.86 0.24 -36.71 16 16 Si 1.01 33.06 29.56 68.60 2.03 35.08 16 17 H -0.26 -8.06 7.11 99.48 0.71 -7.35 16 18 H -0.26 -8.23 7.11 99.48 0.71 -7.52 16 19 H -0.25 -7.88 7.11 99.48 0.71 -7.17 16 20 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.06 2.59 7.16 -2.38 -0.02 2.57 16 27 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 28 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.31 12.81 8.30 -92.71 -0.77 12.04 16 Total: -1.00 -60.60 298.60 3.52 -57.08 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 1.10 Total: 20.15 kcal Atomic # 6 Polarization: -45.56 SS G_CDS: 4.41 Total: -41.15 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -1.61 Total: -61.60 kcal Atomic # 14 Polarization: 33.06 SS G_CDS: 2.03 Total: 35.08 kcal Atomic # 16 Polarization: -7.15 SS G_CDS: -2.41 Total: -9.56 kcal Total: -60.60 3.52 -57.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082427749.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.944 kcal (2) G-P(sol) polarization free energy of solvation -60.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds