Wall clock time and date at job start Mon Mar 30 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00070 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.50700 * 109.46769 * 179.72341 * 12 11 9 14 14 C 1.38263 * 119.99266 * 259.72094 * 13 12 11 15 15 C 1.38218 * 120.06240 * 179.73139 * 14 13 12 16 16 C 1.38245 * 120.04763 * 0.54437 * 15 14 13 17 17 C 1.38405 * 119.98542 * 359.72843 * 16 15 14 18 18 F 1.35097 * 120.02778 * 179.97438 * 17 16 15 19 19 C 1.38275 * 119.99923 * 80.00164 * 13 12 11 20 20 Cl 1.73605 * 120.02058 * 0.02562 * 19 13 12 21 21 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 23 23 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 24 24 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 25 25 H 1.07998 * 119.96655 * 0.02562 * 14 13 12 26 26 H 1.08005 * 119.97885 * 180.27895 * 15 14 13 27 27 H 1.08002 * 120.00375 * 179.75305 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 6 2.1960 -6.0618 -0.0111 14 6 2.4827 -6.7203 -1.1926 15 6 3.3849 -7.7673 -1.2003 16 6 3.9936 -8.1653 -0.0246 17 6 3.7038 -7.5112 1.1602 18 9 4.2978 -7.8997 2.3097 19 6 2.8033 -6.4578 1.1663 20 17 2.4375 -5.6364 2.6513 21 1 -0.4849 0.8400 -0.0004 22 1 2.9191 -3.6476 0.0002 23 1 0.5900 -4.9784 0.8842 24 1 0.5899 -4.9699 -0.8957 25 1 2.0049 -6.4130 -2.1111 26 1 3.6113 -8.2779 -2.1247 27 1 4.6955 -8.9861 -0.0307 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083355031.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:43 Heat of formation + Delta-G solvation = -69.916704 kcal Electronic energy + Delta-G solvation = -16142.528860 eV Core-core repulsion = 13033.457602 eV Total energy + Delta-G solvation = -3109.071258 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.036 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.00665 -39.42299 -37.13175 -36.37531 -33.77934 -32.38044 -30.73660 -30.47795 -26.94942 -25.04998 -22.84161 -21.71960 -19.69788 -17.83725 -16.99475 -16.69452 -16.40201 -15.82132 -15.31798 -14.60040 -14.36149 -14.07051 -13.93116 -13.02001 -12.94575 -12.76365 -12.23858 -12.10322 -11.50876 -11.39987 -11.36938 -11.12471 -10.90835 -10.60389 -10.43768 -10.22316 -9.01808 -8.84787 -8.74295 -7.61158 -7.53705 -6.18421 -4.63584 0.89270 0.94745 2.14093 3.14748 3.21581 3.25039 3.32482 3.97172 4.12336 4.50770 4.58634 4.72099 4.92850 5.03764 5.12804 5.43187 5.64613 5.76836 5.82508 5.94160 6.12480 6.32430 6.50757 6.60887 7.44119 7.89957 8.04520 8.32335 9.02934 9.50998 10.59610 10.77828 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.005302 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.055465 B = 5279.982436 C = 5513.143005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.557 3.443 10 O -0.579 6.579 11 N -0.758 5.758 12 C 0.167 3.833 13 C -0.053 4.053 14 C -0.104 4.104 15 C -0.090 4.090 16 C -0.148 4.148 17 C 0.103 3.897 18 F -0.130 7.130 19 C -0.064 4.064 20 Cl -0.035 7.035 21 H 0.268 0.732 22 H 0.381 0.619 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.043 -14.457 -0.950 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.362 3.638 10 O -0.462 6.462 11 N -0.414 5.414 12 C 0.042 3.958 13 C -0.054 4.054 14 C -0.123 4.123 15 C -0.108 4.108 16 C -0.168 4.168 17 C 0.083 3.917 18 F -0.109 7.109 19 C -0.093 4.093 20 Cl -0.006 7.006 21 H 0.079 0.921 22 H 0.212 0.788 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.158 0.842 26 H 0.156 0.844 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.919 -14.277 -0.752 15.883 hybrid contribution 1.072 0.703 0.367 1.334 sum 7.992 -13.573 -0.384 15.756 Atomic orbital electron populations 1.70017 1.07029 1.27260 1.35351 1.25702 0.94621 1.00258 0.92630 0.86375 0.80184 0.81412 0.78804 1.19753 1.20470 1.18908 1.20857 0.93588 0.89226 1.54320 0.91424 1.18218 0.87178 0.82184 0.76267 1.90605 1.14054 1.86596 1.54957 1.46136 1.08522 1.03830 1.82957 1.19864 0.91839 0.81718 1.02382 1.20100 0.97039 0.97418 0.90844 1.21223 0.97968 0.95430 0.97705 1.21090 0.95548 0.96483 0.97688 1.21089 1.02884 1.01765 0.91013 1.17413 0.95620 0.95798 0.82881 1.91524 1.81869 1.90020 1.47457 1.21014 1.01024 0.96902 0.90318 1.98420 1.93362 1.77426 1.31388 0.92110 0.78780 0.91466 0.91729 0.84155 0.84417 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.01 11.83 55.55 0.66 -22.35 15 2 C 0.09 2.45 5.50 -17.36 -0.10 2.35 15 3 Si 0.91 20.19 29.56 -169.99 -5.02 15.17 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 6 H -0.26 -5.73 7.11 56.52 0.40 -5.32 15 7 C -0.54 -15.32 9.54 -35.63 -0.34 -15.66 15 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 15 9 C 0.56 15.73 7.75 -12.99 -0.10 15.63 15 10 O -0.58 -18.62 15.02 5.20 0.08 -18.54 15 11 N -0.76 -16.81 5.54 -62.90 -0.35 -17.16 15 12 C 0.17 3.16 5.21 -5.19 -0.03 3.13 15 13 C -0.05 -0.79 5.25 -104.60 -0.55 -1.34 15 14 C -0.10 -1.24 9.67 -39.58 -0.38 -1.62 15 15 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 15 16 C -0.15 -1.53 10.03 -39.52 -0.40 -1.93 15 17 C 0.10 1.36 7.28 -39.39 -0.29 1.07 15 18 F -0.13 -1.78 16.84 2.25 0.04 -1.74 15 19 C -0.06 -0.97 6.32 -39.44 -0.25 -1.21 15 20 Cl -0.04 -0.58 27.18 -51.86 -1.41 -1.99 15 21 H 0.27 7.29 8.29 -40.82 -0.34 6.95 15 22 H 0.38 7.68 8.44 -40.82 -0.34 7.34 15 23 H 0.07 1.38 7.35 -51.93 -0.38 1.00 15 24 H 0.06 1.23 8.00 -51.93 -0.42 0.82 15 25 H 0.14 1.47 8.03 -52.49 -0.42 1.05 15 26 H 0.14 0.88 8.06 -52.48 -0.42 0.46 15 27 H 0.14 1.08 8.06 -52.49 -0.42 0.65 15 LS Contribution 267.96 15.07 4.04 4.04 Total: -1.00 -33.57 267.96 -6.75 -40.32 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -1.95 Total: 3.10 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.82 Total: -0.84 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.31 Total: -39.51 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.08 Total: -18.54 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.41 Total: -1.99 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.57 -6.75 -40.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083355031.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.592 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds