Wall clock time and date at job start Mon Mar 30 2020 06:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46785 * 2 1 4 4 C 1.52998 * 109.46905 * 240.00067 * 2 1 3 5 5 S 1.81395 * 109.46941 * 119.99979 * 2 1 3 6 6 C 1.81400 * 103.00002 * 60.00018 * 5 2 1 7 7 C 1.50708 * 109.47108 * 179.97438 * 6 5 2 8 8 N 1.28793 * 124.99090 * 90.00472 * 7 6 5 9 9 C 1.33641 * 116.06186 * 180.02562 * 8 7 6 10 10 C 1.41160 * 122.86355 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99982 * 188.43019 * 10 9 8 12 12 C 1.39717 * 120.00064 * 8.42928 * 10 9 8 13 13 N 1.31020 * 120.00433 * 194.39899 * 12 10 9 14 14 Si 1.86805 * 120.00097 * 14.39588 * 12 10 9 15 15 H 1.48502 * 109.47056 * 270.00135 * 14 12 10 16 16 H 1.48503 * 109.46880 * 29.99741 * 14 12 10 17 17 H 1.48498 * 109.47260 * 150.00152 * 14 12 10 18 18 C 1.37693 * 114.27598 * 0.24400 * 9 8 7 19 19 S 1.70993 * 108.83817 * 359.63118 * 18 9 8 20 20 H 1.09000 * 109.47274 * 299.99867 * 1 2 3 21 21 H 1.08998 * 109.46918 * 60.00436 * 1 2 3 22 22 H 1.09004 * 109.47043 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46850 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47562 * 299.99488 * 3 2 1 25 25 H 1.08992 * 109.47292 * 60.00238 * 3 2 1 26 26 H 1.09007 * 109.47521 * 299.99634 * 4 2 1 27 27 H 1.08998 * 109.47743 * 60.00003 * 4 2 1 28 28 H 1.09004 * 109.47325 * 180.02562 * 4 2 1 29 29 H 1.09007 * 109.47360 * 60.00090 * 6 5 2 30 30 H 1.08995 * 109.47482 * 299.99991 * 6 5 2 31 31 H 0.97001 * 119.99458 * 354.77663 * 13 12 10 32 32 H 1.08006 * 125.58340 * 179.75160 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 2.1346 -0.8551 1.4811 6 6 1.4374 -2.5204 1.3040 7 6 1.8570 -3.3680 2.4774 8 7 1.2013 -3.4790 3.5803 9 6 1.7384 -4.2810 4.5046 10 6 1.1414 -4.5060 5.7638 11 1 1.6779 -5.0515 6.5260 12 6 -0.1435 -4.0230 6.0241 13 7 -0.5890 -3.9765 7.2554 14 14 -1.2264 -3.4433 4.6167 15 1 -0.9987 -1.9949 4.3811 16 1 -0.8887 -4.2039 3.3867 17 1 -2.6524 -3.6703 4.9633 18 6 2.9268 -4.8645 4.1262 19 16 3.3144 -4.3506 2.5421 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 -1.7490 -1.2493 27 1 1.6767 -0.2075 -2.1393 28 1 3.1300 -0.7217 -1.2491 29 1 1.8031 -2.9712 0.3814 30 1 0.3498 -2.4574 1.2714 31 1 -0.0578 -4.3469 7.9776 32 1 3.5165 -5.5383 4.7302 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083491089.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:31 Heat of formation + Delta-G solvation = 6.512097 kcal Electronic energy + Delta-G solvation = -14775.704385 eV Core-core repulsion = 12374.037306 eV Total energy + Delta-G solvation = -2401.667079 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.34838 -36.33597 -33.56591 -31.44301 -28.11488 -27.47595 -27.02152 -25.85242 -21.63753 -20.53938 -19.14447 -18.36579 -16.43184 -15.83749 -15.14016 -14.74212 -14.34671 -14.14381 -13.78056 -13.44074 -13.09431 -12.90382 -12.53524 -12.37086 -12.05032 -11.85884 -11.55632 -11.44006 -11.17331 -11.09768 -10.79654 -10.59071 -10.09021 -9.74031 -9.61199 -9.07900 -8.42457 -8.14120 -7.65881 -7.45973 -7.22634 -4.54337 1.33120 2.21651 2.48247 2.74678 3.34916 3.44484 3.50138 3.84888 4.08100 4.32108 4.62622 4.63182 4.73197 4.98658 5.21592 5.29009 5.40729 5.44459 5.57581 5.61018 5.67150 5.68094 5.70938 5.92336 6.07090 6.13070 6.41544 6.88046 7.15412 7.57577 8.06412 8.16652 8.70180 9.02767 10.10202 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.007418 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.941622 B = 3773.811825 C = 4558.698321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C -0.125 4.125 4 C -0.143 4.143 5 S -0.222 6.222 6 C -0.003 4.003 7 C 0.073 3.927 8 N -0.462 5.462 9 C 0.211 3.789 10 C -0.481 4.481 11 H 0.082 0.918 12 C 0.047 3.953 13 N -0.818 5.818 14 Si 1.118 2.882 15 H -0.278 1.278 16 H -0.277 1.277 17 H -0.314 1.314 18 C -0.446 4.446 19 S 0.035 5.965 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.283 0.717 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 7.094 -15.776 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.184 4.184 4 C -0.202 4.202 5 S 0.006 5.994 6 C -0.155 4.155 7 C -0.207 4.207 8 N -0.183 5.183 9 C 0.090 3.910 10 C -0.516 4.516 11 H 0.100 0.900 12 C -0.172 4.172 13 N -0.442 5.442 14 Si 0.948 3.052 15 H -0.204 1.204 16 H -0.203 1.203 17 H -0.245 1.245 18 C -0.586 4.586 19 S 0.283 5.717 20 H 0.089 0.911 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.868 8.223 -15.731 17.849 hybrid contribution 0.559 -1.581 0.666 1.804 sum 2.427 6.642 -15.066 16.643 Atomic orbital electron populations 1.22147 0.92822 1.02651 1.02823 1.22738 0.98488 0.98555 0.95607 1.21619 1.01685 0.92537 1.02519 1.22135 1.02098 1.00092 0.95891 1.87289 1.69731 1.09952 1.32466 1.21777 1.03889 0.93277 0.96535 1.26276 0.95993 1.01686 0.96791 1.66167 1.31310 1.19276 1.01514 1.18020 0.90494 0.89915 0.92619 1.19993 1.01488 1.33508 0.96579 0.90036 1.27407 0.97115 0.91562 1.01153 1.70686 1.41783 1.31313 1.00371 0.82651 0.71291 0.78279 0.72953 1.20394 1.20350 1.24503 1.25099 1.09065 1.23451 1.00935 1.82613 1.26888 1.45928 1.16298 0.91137 0.91919 0.92331 0.91743 0.91402 0.91626 0.92408 0.91927 0.91325 0.88557 0.88035 0.90636 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.32 37.16 0.31 -1.25 16 2 C -0.04 -0.50 0.95 -90.62 -0.09 -0.58 16 3 C -0.13 -1.23 8.48 37.15 0.32 -0.91 16 4 C -0.14 -1.37 8.32 37.16 0.31 -1.06 16 5 S -0.22 -3.56 20.64 -107.50 -2.22 -5.78 16 6 C 0.00 -0.06 5.66 36.01 0.20 0.15 16 7 C 0.07 1.58 6.83 -13.55 -0.09 1.49 16 8 N -0.46 -11.79 5.59 -8.36 -0.05 -11.83 16 9 C 0.21 5.74 6.17 -86.17 -0.53 5.21 16 10 C -0.48 -13.85 9.62 -37.92 -0.36 -14.22 16 11 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 12 C 0.05 1.34 5.51 -17.35 -0.10 1.25 16 13 N -0.82 -23.27 13.67 55.54 0.76 -22.51 16 14 Si 1.12 27.84 26.12 -169.99 -4.44 23.40 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.77 6.44 56.52 0.36 -6.41 16 17 H -0.31 -7.59 7.11 56.52 0.40 -7.19 16 18 C -0.45 -11.11 10.98 30.53 0.34 -10.78 16 19 S 0.03 0.72 23.16 -107.50 -2.49 -1.77 16 20 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.65 6.68 -51.93 -0.35 0.30 16 23 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.56 6.68 -51.92 -0.35 0.21 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 1.34 7.00 -51.92 -0.36 0.98 16 30 H 0.10 1.66 7.00 -51.93 -0.36 1.29 16 31 H 0.28 7.74 8.73 -40.82 -0.36 7.39 16 32 H 0.14 3.45 8.06 -52.48 -0.42 3.03 16 LS Contribution 289.85 15.07 4.37 4.37 Total: -1.00 -30.17 289.85 -8.18 -38.35 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -4.41 Total: -3.51 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 0.30 Total: -20.71 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.71 Total: -34.35 kcal Atomic # 14 Polarization: 27.84 SS G_CDS: -4.44 Total: 23.40 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -4.71 Total: -7.55 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.17 -8.18 -38.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083491089.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.866 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds