Wall clock time and date at job start Mon Mar 30 2020 06:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46785 * 2 1 4 4 C 1.52998 * 109.46905 * 240.00067 * 2 1 3 5 5 S 1.81395 * 109.46941 * 119.99979 * 2 1 3 6 6 C 1.81400 * 103.00002 * 60.00018 * 5 2 1 7 7 C 1.50708 * 109.47108 * 179.97438 * 6 5 2 8 8 N 1.28793 * 124.99090 * 90.00472 * 7 6 5 9 9 C 1.33641 * 116.06186 * 180.02562 * 8 7 6 10 10 C 1.41160 * 122.86355 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99982 * 188.43019 * 10 9 8 12 12 C 1.39717 * 120.00064 * 8.42928 * 10 9 8 13 13 N 1.31020 * 120.00433 * 194.39899 * 12 10 9 14 14 Si 1.86805 * 120.00097 * 14.39588 * 12 10 9 15 15 H 1.48502 * 109.47056 * 270.00135 * 14 12 10 16 16 H 1.48503 * 109.46880 * 29.99741 * 14 12 10 17 17 H 1.48498 * 109.47260 * 150.00152 * 14 12 10 18 18 C 1.37693 * 114.27598 * 0.24400 * 9 8 7 19 19 S 1.70993 * 108.83817 * 359.63118 * 18 9 8 20 20 H 1.09000 * 109.47274 * 299.99867 * 1 2 3 21 21 H 1.08998 * 109.46918 * 60.00436 * 1 2 3 22 22 H 1.09004 * 109.47043 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46850 * 180.02562 * 3 2 1 24 24 H 1.08997 * 109.47562 * 299.99488 * 3 2 1 25 25 H 1.08992 * 109.47292 * 60.00238 * 3 2 1 26 26 H 1.09007 * 109.47521 * 299.99634 * 4 2 1 27 27 H 1.08998 * 109.47743 * 60.00003 * 4 2 1 28 28 H 1.09004 * 109.47325 * 180.02562 * 4 2 1 29 29 H 1.09007 * 109.47360 * 60.00090 * 6 5 2 30 30 H 1.08995 * 109.47482 * 299.99991 * 6 5 2 31 31 H 0.97001 * 119.99458 * 354.77663 * 13 12 10 32 32 H 1.08006 * 125.58340 * 179.75160 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 2.1346 -0.8551 1.4811 6 6 1.4374 -2.5204 1.3040 7 6 1.8570 -3.3680 2.4774 8 7 1.2013 -3.4790 3.5803 9 6 1.7384 -4.2810 4.5046 10 6 1.1414 -4.5060 5.7638 11 1 1.6779 -5.0515 6.5260 12 6 -0.1435 -4.0230 6.0241 13 7 -0.5890 -3.9765 7.2554 14 14 -1.2264 -3.4433 4.6167 15 1 -0.9987 -1.9949 4.3811 16 1 -0.8887 -4.2039 3.3867 17 1 -2.6524 -3.6703 4.9633 18 6 2.9268 -4.8645 4.1262 19 16 3.3144 -4.3506 2.5421 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 -1.7490 -1.2493 27 1 1.6767 -0.2075 -2.1393 28 1 3.1300 -0.7217 -1.2491 29 1 1.8031 -2.9712 0.3814 30 1 0.3498 -2.4574 1.2714 31 1 -0.0578 -4.3469 7.9776 32 1 3.5165 -5.5383 4.7302 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083491089.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:31 Heat of formation + Delta-G solvation = -10.835292 kcal Electronic energy + Delta-G solvation = -14776.456624 eV Core-core repulsion = 12374.037306 eV Total energy + Delta-G solvation = -2402.419318 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25478 -37.15849 -35.60572 -33.14697 -29.68558 -28.23587 -28.00467 -27.89005 -23.35275 -21.56885 -21.08208 -20.28117 -18.05846 -17.29969 -16.44210 -16.37692 -15.50209 -15.18109 -15.12076 -14.99559 -14.79732 -14.68801 -13.97166 -13.54998 -13.30761 -12.93843 -12.92877 -12.57327 -12.54726 -12.40913 -11.97606 -11.95913 -11.90906 -11.79922 -11.15882 -10.68159 -10.24076 -9.99548 -9.59334 -9.35553 -8.69451 -6.66989 -0.21381 0.65458 0.87768 1.40787 1.44323 1.49028 1.60652 1.90161 2.10602 2.34536 3.09216 3.22299 3.81063 3.82924 3.97918 4.18352 4.27882 4.61174 4.69301 4.74675 4.84640 4.90066 4.91680 4.93181 4.95320 5.12427 5.19749 5.32586 5.36316 5.39699 5.92837 6.07241 6.63172 7.09114 7.95921 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.007418 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.941622 B = 3773.811825 C = 4558.698321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.026 4.026 3 C -0.125 4.125 4 C -0.142 4.142 5 S -0.281 6.281 6 C 0.000 4.000 7 C 0.077 3.923 8 N -0.499 5.499 9 C 0.192 3.808 10 C -0.518 4.518 11 H 0.056 0.944 12 C 0.017 3.983 13 N -0.843 5.843 14 Si 1.154 2.846 15 H -0.277 1.277 16 H -0.271 1.271 17 H -0.306 1.306 18 C -0.462 4.462 19 S 0.118 5.882 20 H 0.055 0.945 21 H 0.091 0.909 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.277 0.723 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 8.221 -19.666 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 C -0.183 4.183 4 C -0.201 4.201 5 S -0.054 6.054 6 C -0.151 4.151 7 C -0.203 4.203 8 N -0.220 5.220 9 C 0.070 3.930 10 C -0.553 4.553 11 H 0.075 0.925 12 C -0.198 4.198 13 N -0.468 5.468 14 Si 0.981 3.019 15 H -0.204 1.204 16 H -0.198 1.198 17 H -0.236 1.236 18 C -0.602 4.602 19 S 0.368 5.632 20 H 0.074 0.926 21 H 0.110 0.890 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.149 0.851 30 H 0.126 0.874 31 H 0.088 0.912 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.190 9.331 -19.629 21.844 hybrid contribution 0.689 -1.879 1.668 2.605 sum 2.879 7.451 -17.962 19.658 Atomic orbital electron populations 1.22171 0.92221 1.02690 1.03542 1.22908 0.98800 0.98600 0.93276 1.21662 1.01682 0.91595 1.03393 1.22142 1.02129 1.00195 0.95610 1.87477 1.70359 1.10408 1.37191 1.21911 1.04497 0.93128 0.95596 1.27173 0.95564 1.00770 0.96802 1.66145 1.32858 1.20442 1.02567 1.18114 0.91315 0.90675 0.92884 1.19974 1.02367 1.35477 0.97489 0.92547 1.28341 0.97834 0.91318 1.02273 1.70729 1.42125 1.33285 1.00633 0.82195 0.70499 0.77894 0.71297 1.20373 1.19776 1.23636 1.25506 1.08352 1.22501 1.03799 1.82216 1.25260 1.43755 1.11965 0.92563 0.89040 0.92666 0.91870 0.88431 0.92725 0.92341 0.89347 0.91395 0.85142 0.87418 0.91243 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.32 71.98 0.60 -2.06 16 2 C -0.03 -0.50 0.95 -10.79 -0.01 -0.51 16 3 C -0.12 -2.04 8.48 71.98 0.61 -1.42 16 4 C -0.14 -2.08 8.32 71.98 0.60 -1.49 16 5 S -0.28 -8.42 20.64 -56.49 -1.17 -9.59 16 6 C 0.00 -0.01 5.66 71.24 0.40 0.39 16 7 C 0.08 3.16 6.83 88.56 0.60 3.77 16 8 N -0.50 -25.10 5.59 -180.35 -1.01 -26.11 16 9 C 0.19 10.61 6.17 39.46 0.24 10.85 16 10 C -0.52 -31.07 9.62 23.35 0.22 -30.84 16 11 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 12 C 0.02 0.98 5.51 85.17 0.47 1.45 16 13 N -0.84 -49.78 13.67 21.79 0.30 -49.49 16 14 Si 1.15 57.10 26.12 68.60 1.79 58.90 16 15 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 16 H -0.27 -12.97 6.44 99.48 0.64 -12.33 16 17 H -0.31 -14.43 7.11 99.48 0.71 -13.73 16 18 C -0.46 -22.85 10.98 67.69 0.74 -22.11 16 19 S 0.12 4.61 23.16 -56.49 -1.31 3.30 16 20 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.05 1.04 6.68 -2.38 -0.02 1.02 16 23 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 0.86 6.68 -2.38 -0.02 0.84 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.13 3.06 7.00 -2.39 -0.02 3.04 16 30 H 0.11 3.21 7.00 -2.39 -0.02 3.19 16 31 H 0.28 16.02 8.73 -92.71 -0.81 15.21 16 32 H 0.14 6.92 8.06 -2.91 -0.02 6.89 16 Total: -1.00 -66.98 289.85 4.09 -62.89 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 1.00 Total: 2.07 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 4.49 Total: -41.97 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -0.71 Total: -75.59 kcal Atomic # 14 Polarization: 57.10 SS G_CDS: 1.79 Total: 58.90 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -2.47 Total: -6.29 kcal Total: -66.98 4.09 -62.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083491089.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.054 kcal (2) G-P(sol) polarization free energy of solvation -66.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds