Wall clock time and date at job start Mon Mar 30 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47085 * 2 1 4 4 H 1.08999 * 109.47332 * 54.99623 * 3 2 1 5 5 C 1.52999 * 109.46860 * 175.00272 * 3 2 1 6 6 S 1.81401 * 109.46917 * 295.00101 * 3 2 1 7 7 C 1.81392 * 102.99948 * 175.00413 * 6 3 2 8 8 C 1.50702 * 109.47133 * 179.97438 * 7 6 3 9 9 N 1.28801 * 124.99284 * 89.97910 * 8 7 6 10 10 C 1.33649 * 116.06027 * 180.02562 * 9 8 7 11 11 C 1.41153 * 122.85985 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99590 * 174.03465 * 11 10 9 13 13 C 1.39718 * 120.00328 * 354.03062 * 11 10 9 14 14 N 1.31016 * 119.99993 * 6.17532 * 13 11 10 15 15 Si 1.86803 * 120.00034 * 186.17397 * 13 11 10 16 16 H 1.48496 * 109.46896 * 94.98548 * 15 13 11 17 17 H 1.48498 * 109.46908 * 214.98563 * 15 13 11 18 18 H 1.48492 * 109.47133 * 334.98421 * 15 13 11 19 19 C 1.37696 * 114.27529 * 0.02562 * 10 9 8 20 20 S 1.71001 * 108.84162 * 359.97438 * 19 10 9 21 21 H 1.08996 * 109.46972 * 60.00173 * 1 2 3 22 22 H 1.09005 * 109.47032 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47151 * 299.99733 * 1 2 3 24 24 H 1.08996 * 109.47329 * 239.99589 * 2 1 3 25 25 H 1.09005 * 109.47208 * 119.99971 * 2 1 3 26 26 H 1.09005 * 109.46784 * 179.97438 * 5 3 2 27 27 H 1.09004 * 109.46988 * 299.99211 * 5 3 2 28 28 H 1.08997 * 109.47305 * 59.99936 * 5 3 2 29 29 H 1.08998 * 109.47612 * 59.99786 * 7 6 3 30 30 H 1.09009 * 109.47058 * 299.99662 * 7 6 3 31 31 H 0.97002 * 120.00607 * 179.97438 * 14 13 11 32 32 H 1.08005 * 125.58143 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4443 0.1257 6 16 1.5600 2.2535 -1.5500 7 6 2.1078 3.9648 -1.3018 8 6 1.7751 4.7811 -2.5242 9 7 0.6725 5.4211 -2.7074 10 6 0.5657 6.0886 -3.8604 11 6 -0.5792 6.8369 -4.2088 12 1 -0.5796 7.4364 -5.1072 13 6 -1.7120 6.8021 -3.3917 14 7 -1.6718 6.1741 -2.2426 15 14 -3.2839 7.6511 -3.9375 16 1 -4.1715 6.6665 -4.6067 17 1 -3.9773 8.2179 -2.7530 18 1 -2.9523 8.7439 -4.8867 19 6 1.6673 5.9830 -4.6797 20 16 2.8352 4.9987 -3.9108 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.9282 2.4720 0.1252 27 1 3.8532 0.9570 1.0571 28 1 3.9994 0.9053 -0.7161 29 1 3.1850 3.9813 -1.1365 30 1 1.6005 4.3864 -0.4339 31 1 -2.4581 6.1502 -1.6750 32 1 1.7763 6.4468 -5.6490 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083500159.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:48 Heat of formation + Delta-G solvation = 15.880427 kcal Electronic energy + Delta-G solvation = -14479.159179 eV Core-core repulsion = 12077.898341 eV Total energy + Delta-G solvation = -2401.260838 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.81245 -35.64556 -33.35144 -31.17637 -30.10473 -27.51411 -25.55629 -23.80499 -21.94992 -21.06468 -18.74687 -17.70355 -16.33444 -15.30990 -15.14601 -14.99843 -14.12018 -13.98467 -13.58307 -13.44521 -13.13572 -12.64765 -12.45019 -11.92023 -11.62078 -11.55599 -11.39503 -11.20959 -11.17611 -10.92205 -10.74933 -10.68992 -10.39174 -9.69237 -9.47546 -9.23069 -8.06681 -7.98096 -7.34571 -7.20618 -6.53087 -4.35205 1.62472 2.50484 2.86996 2.96832 3.10752 3.13566 3.15362 3.65128 4.01823 4.33576 4.70494 4.88235 5.08381 5.16199 5.39404 5.44188 5.50736 5.54460 5.59663 5.73670 5.87838 5.96593 5.97195 6.08973 6.19647 6.41059 6.75103 7.08657 7.24272 7.48068 8.19240 8.53980 8.88221 9.56078 10.34709 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.006235 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.597798 B = 4489.622621 C = 5474.249750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.099 4.099 3 C -0.070 4.070 4 H 0.084 0.916 5 C -0.147 4.147 6 S -0.224 6.224 7 C 0.006 3.994 8 C 0.059 3.941 9 N -0.380 5.380 10 C 0.224 3.776 11 C -0.432 4.432 12 H 0.085 0.915 13 C 0.072 3.928 14 N -0.748 5.748 15 Si 0.911 3.089 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.449 4.449 20 S -0.021 6.021 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.274 0.726 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.239 -8.595 6.375 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.138 4.138 3 C -0.199 4.199 4 H 0.103 0.897 5 C -0.206 4.206 6 S 0.003 5.997 7 C -0.146 4.146 8 C -0.225 4.225 9 N -0.096 5.096 10 C 0.102 3.898 11 C -0.467 4.467 12 H 0.103 0.897 13 C -0.151 4.151 14 N -0.371 5.371 15 Si 0.736 3.264 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.589 4.589 20 S 0.226 5.774 21 H 0.090 0.910 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.131 -9.411 5.839 12.206 hybrid contribution -0.917 1.554 0.479 1.867 sum 4.214 -7.856 6.318 10.927 Atomic orbital electron populations 1.21856 0.95031 1.01373 1.03198 1.21320 0.96750 0.93413 1.02294 1.23239 0.98669 0.99468 0.98557 0.89723 1.22095 0.93840 1.02414 1.02280 1.87234 1.81067 1.07115 1.24275 1.21633 1.02671 0.92943 0.97324 1.26707 0.94247 1.03568 0.97943 1.67342 1.16431 1.06012 1.19775 1.17999 0.93418 0.92834 0.85538 1.18958 0.95233 1.24558 1.07912 0.89723 1.25987 1.00452 0.94480 0.94166 1.70107 1.29296 1.30290 1.07427 0.86253 0.81074 0.80013 0.79100 1.19503 1.20213 1.18613 1.25180 1.01256 1.23792 1.08671 1.82607 1.25489 1.52157 1.17152 0.91023 0.92961 0.92737 0.91236 0.91201 0.92443 0.92226 0.91406 0.89393 0.88260 0.91542 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.74 37.16 0.36 -1.49 16 2 C -0.10 -1.10 5.40 -26.73 -0.14 -1.24 16 3 C -0.07 -0.88 2.82 -26.73 -0.08 -0.96 16 4 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 5 C -0.15 -1.57 9.10 37.16 0.34 -1.24 16 6 S -0.22 -3.89 19.94 -107.50 -2.14 -6.03 16 7 C 0.01 0.11 6.24 36.01 0.22 0.34 16 8 C 0.06 1.38 6.83 -13.55 -0.09 1.29 16 9 N -0.38 -10.45 8.49 -8.35 -0.07 -10.52 16 10 C 0.22 6.38 6.46 -86.17 -0.56 5.82 16 11 C -0.43 -12.10 9.23 -37.92 -0.35 -12.45 16 12 H 0.08 2.25 7.85 -52.48 -0.41 1.84 16 13 C 0.07 1.89 5.49 -17.35 -0.10 1.80 16 14 N -0.75 -20.46 11.72 55.54 0.65 -19.81 16 15 Si 0.91 19.38 29.56 -169.99 -5.03 14.36 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 19 C -0.45 -11.71 10.98 30.53 0.34 -11.37 16 20 S -0.02 -0.48 23.16 -107.50 -2.49 -2.97 16 21 H 0.07 1.02 7.13 -51.93 -0.37 0.65 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.62 6.92 -51.93 -0.36 0.27 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.39 7.14 -51.92 -0.37 1.02 16 30 H 0.10 1.84 8.14 -51.92 -0.42 1.41 16 31 H 0.27 6.82 8.30 -40.82 -0.34 6.48 16 32 H 0.14 3.44 8.06 -52.48 -0.42 3.02 16 LS Contribution 297.02 15.07 4.48 4.48 Total: -1.00 -29.97 297.02 -9.11 -39.08 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.45 Total: 0.93 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -0.05 Total: -19.51 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.58 Total: -30.32 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.36 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -4.63 Total: -9.00 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.97 -9.11 -39.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083500159.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.958 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds