Wall clock time and date at job start Mon Mar 30 2020 06:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47085 * 2 1 4 4 H 1.08999 * 109.47332 * 54.99623 * 3 2 1 5 5 C 1.52999 * 109.46860 * 175.00272 * 3 2 1 6 6 S 1.81401 * 109.46917 * 295.00101 * 3 2 1 7 7 C 1.81392 * 102.99948 * 175.00413 * 6 3 2 8 8 C 1.50702 * 109.47133 * 179.97438 * 7 6 3 9 9 N 1.28801 * 124.99284 * 89.97910 * 8 7 6 10 10 C 1.33649 * 116.06027 * 180.02562 * 9 8 7 11 11 C 1.41153 * 122.85985 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99590 * 174.03465 * 11 10 9 13 13 C 1.39718 * 120.00328 * 354.03062 * 11 10 9 14 14 N 1.31016 * 119.99993 * 6.17532 * 13 11 10 15 15 Si 1.86803 * 120.00034 * 186.17397 * 13 11 10 16 16 H 1.48496 * 109.46896 * 94.98548 * 15 13 11 17 17 H 1.48498 * 109.46908 * 214.98563 * 15 13 11 18 18 H 1.48492 * 109.47133 * 334.98421 * 15 13 11 19 19 C 1.37696 * 114.27529 * 0.02562 * 10 9 8 20 20 S 1.71001 * 108.84162 * 359.97438 * 19 10 9 21 21 H 1.08996 * 109.46972 * 60.00173 * 1 2 3 22 22 H 1.09005 * 109.47032 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47151 * 299.99733 * 1 2 3 24 24 H 1.08996 * 109.47329 * 239.99589 * 2 1 3 25 25 H 1.09005 * 109.47208 * 119.99971 * 2 1 3 26 26 H 1.09005 * 109.46784 * 179.97438 * 5 3 2 27 27 H 1.09004 * 109.46988 * 299.99211 * 5 3 2 28 28 H 1.08997 * 109.47305 * 59.99936 * 5 3 2 29 29 H 1.08998 * 109.47612 * 59.99786 * 7 6 3 30 30 H 1.09009 * 109.47058 * 299.99662 * 7 6 3 31 31 H 0.97002 * 120.00607 * 179.97438 * 14 13 11 32 32 H 1.08005 * 125.58143 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4443 0.1257 6 16 1.5600 2.2535 -1.5500 7 6 2.1078 3.9648 -1.3018 8 6 1.7751 4.7811 -2.5242 9 7 0.6725 5.4211 -2.7074 10 6 0.5657 6.0886 -3.8604 11 6 -0.5792 6.8369 -4.2088 12 1 -0.5796 7.4364 -5.1072 13 6 -1.7120 6.8021 -3.3917 14 7 -1.6718 6.1741 -2.2426 15 14 -3.2839 7.6511 -3.9375 16 1 -4.1715 6.6665 -4.6067 17 1 -3.9773 8.2179 -2.7530 18 1 -2.9523 8.7439 -4.8867 19 6 1.6673 5.9830 -4.6797 20 16 2.8352 4.9987 -3.9108 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.9282 2.4720 0.1252 27 1 3.8532 0.9570 1.0571 28 1 3.9994 0.9053 -0.7161 29 1 3.1850 3.9813 -1.1365 30 1 1.6005 4.3864 -0.4339 31 1 -2.4581 6.1502 -1.6750 32 1 1.7763 6.4468 -5.6490 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083500159.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:47 Heat of formation + Delta-G solvation = -0.787218 kcal Electronic energy + Delta-G solvation = -14479.881942 eV Core-core repulsion = 12077.898341 eV Total energy + Delta-G solvation = -2401.983601 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.76822 -36.57866 -35.31224 -32.88417 -31.13668 -29.32484 -27.57011 -24.70616 -23.66096 -22.22622 -20.63563 -19.65846 -17.58764 -17.07871 -16.95844 -16.41956 -15.66948 -15.08775 -14.95831 -14.72934 -14.53696 -14.30553 -13.76967 -13.48329 -13.25233 -12.99252 -12.79423 -12.64171 -12.55165 -12.23379 -12.20537 -11.88348 -11.72257 -11.59932 -11.16040 -10.67054 -9.98668 -9.90170 -9.29012 -8.58147 -8.48496 -6.41783 0.01364 0.88515 1.07346 1.36439 1.41826 1.51633 1.67739 1.70948 2.22374 2.39372 3.40453 3.43491 3.77729 3.96222 4.07416 4.25256 4.41375 4.50503 4.63671 4.74250 4.84426 4.91001 5.01335 5.07436 5.09337 5.23939 5.27480 5.31654 5.45763 5.45877 6.13251 6.50930 6.84579 7.60806 8.41148 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.006235 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.597798 B = 4489.622621 C = 5474.249750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 C -0.052 4.052 4 H 0.088 0.912 5 C -0.145 4.145 6 S -0.275 6.275 7 C 0.010 3.990 8 C 0.062 3.938 9 N -0.426 5.426 10 C 0.194 3.806 11 C -0.472 4.472 12 H 0.084 0.916 13 C 0.027 3.973 14 N -0.781 5.781 15 Si 0.991 3.009 16 H -0.265 1.265 17 H -0.264 1.264 18 H -0.256 1.256 19 C -0.482 4.482 20 S 0.037 5.963 21 H 0.040 0.960 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.103 0.897 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.281 0.719 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 -9.690 7.670 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.135 4.135 3 C -0.181 4.181 4 H 0.107 0.893 5 C -0.204 4.204 6 S -0.049 6.049 7 C -0.141 4.141 8 C -0.221 4.221 9 N -0.142 5.142 10 C 0.072 3.928 11 C -0.506 4.506 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.404 5.404 15 Si 0.811 3.189 16 H -0.189 1.189 17 H -0.189 1.189 18 H -0.180 1.180 19 C -0.622 4.622 20 S 0.285 5.715 21 H 0.059 0.941 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.137 0.863 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.645 -10.506 7.121 13.891 hybrid contribution -0.946 1.752 0.148 1.997 sum 4.699 -8.753 7.269 12.310 Atomic orbital electron populations 1.21844 0.95869 1.02038 1.01738 1.21371 0.95986 0.92430 1.03704 1.23387 1.00290 0.99524 0.94925 0.89334 1.22087 0.91851 1.02707 1.03725 1.87394 1.82065 1.06599 1.28858 1.21695 1.04482 0.92988 0.94927 1.27542 0.93346 1.02022 0.99229 1.67355 1.18539 1.08081 1.20195 1.18432 0.94335 0.93548 0.86525 1.19316 0.96661 1.25801 1.08794 0.89810 1.26922 1.03618 0.94857 0.93826 1.70197 1.30614 1.31170 1.08461 0.85067 0.76045 0.78810 0.78979 1.18943 1.18868 1.18005 1.25449 1.02505 1.25033 1.09183 1.82160 1.23226 1.50413 1.15665 0.94123 0.91297 0.92504 0.91455 0.87885 0.92660 0.89379 0.91454 0.86318 0.88481 0.90892 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.74 71.98 0.70 -2.77 16 2 C -0.10 -1.86 5.40 30.60 0.17 -1.69 16 3 C -0.05 -1.19 2.82 30.59 0.09 -1.11 16 4 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 5 C -0.14 -2.60 9.10 71.98 0.66 -1.95 16 6 S -0.28 -9.40 19.94 -56.49 -1.13 -10.53 16 7 C 0.01 0.38 6.24 71.24 0.44 0.83 16 8 C 0.06 2.93 6.83 88.55 0.60 3.53 16 9 N -0.43 -24.01 8.49 -180.34 -1.53 -25.54 16 10 C 0.19 11.41 6.46 39.45 0.25 11.66 16 11 C -0.47 -27.34 9.23 23.34 0.22 -27.12 16 12 H 0.08 4.63 7.85 -2.91 -0.02 4.61 16 13 C 0.03 1.46 5.49 85.17 0.47 1.93 16 14 N -0.78 -43.67 11.72 21.79 0.26 -43.42 16 15 Si 0.99 40.19 29.56 68.60 2.03 42.22 16 16 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 17 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 19 C -0.48 -25.79 10.98 67.69 0.74 -25.05 16 20 S 0.04 1.66 23.16 -56.49 -1.31 0.35 16 21 H 0.04 1.14 7.13 -2.39 -0.02 1.13 16 22 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.05 1.02 6.92 -2.38 -0.02 1.01 16 27 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.12 3.51 7.14 -2.39 -0.02 3.50 16 30 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 31 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 32 H 0.14 7.18 8.06 -2.91 -0.02 7.16 16 Total: -1.00 -67.00 297.02 3.76 -63.24 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.10 Total: 15.41 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 4.34 Total: -41.73 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -1.28 Total: -68.96 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Atomic # 16 Polarization: -7.74 SS G_CDS: -2.43 Total: -10.18 kcal Total: -67.00 3.76 -63.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083500159.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.453 kcal (2) G-P(sol) polarization free energy of solvation -66.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds